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Cellosaurus HMY-1 (CVCL_2950)

[Text version]
Cell line name HMY-1
Synonyms HMY1
Accession CVCL_2950
Resource Identification Initiative To cite this cell line use: HMY-1 (RRID:CVCL_2950)
Comments Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE).
Population: Japanese.
Doubling time: 37 hours (PubMed=6239887).
Omics: Deep exome analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis by RNAseq.
Derived from site: Metastatic; Left inguinal lymph node; UBERON=UBERON_0001542.
Sequence variations
  • Mutation; HGNC; 1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Unspecified (DepMap).
HLA typing Source: PubMed=26589293
Class I
HLA-AA*02:06,24:02
HLA-BB*39:01,52:01
HLA-CC*07:02,12:02
Disease Melanoma (NCIt: C3224)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 62Y
Category Cancer cell line
STR profile Source(s): DepMap; JCRB; PubMed=25877200

Markers:
AmelogeninX,Y
CSF1PO12
D3S135815
D5S81812
D7S82011,14
D8S117914
D13S31711,13
D16S53910
D18S5114,17
D21S1130,32.2
FGA22
Penta D14
Penta E17,20
TH016
TPOX11
vWA17,19

Run an STR similarity search on this cell line
Publications

PubMed=6239887; DOI=10.1111/j.1346-8138.1984.tb01486.x
Kondo S., Sato N., Sato K., Hozumi Y., Aso K.
Establishment of cell lines from human malignant melanomas and their application to the assessment of natural killer-like cytotoxicity.
J. Dermatol. 11:328-334(1984)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z.-S., Liu H.-B., Degenhardt J., Mayba O., Gnad F., Liu J.-F., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M.-M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.-M.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=25877200; DOI=10.1038/nature14397
Yu M., Selvaraj S.K., Liang-Chu M.M.Y., Aghajani S., Busse M., Yuan J., Lee G., Peale F.V., Klijn C., Bourgon R., Kaminker J.S., Neve R.M.
A resource for cell line authentication, annotation and quality control.
Nature 520:307-311(2015)

PubMed=26589293; DOI=10.1186/s13073-015-0240-5
Scholtalbers J., Boegel S., Bukur T., Byl M., Goerges S., Sorn P., Loewer M., Sahin U., Castle J.C.
TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.
Genome Med. 7:118.1-118.7(2015)

Cross-references
Cell line collections (Providers) CLS; 305145
JCRB; JCRB1018
JCRB; NIHS0252 - Discontinued
Cell line databases/resources cancercelllines; CVCL_2950
Cell_Model_Passport; SIDM01623
DepMap; ACH-001522
Biological sample resources BioSample; SAMN03472869
Chemistry resources PharmacoDB; HMY1_556_2019
Encyclopedic resources Wikidata; Q54889978
Experimental variables resources EFO; EFO_0006582
Gene expression databases ArrayExpress; E-MTAB-2706
Sequence databases EGA; EGAS00001000610
Entry history
Entry creation04-Apr-2012
Last entry update05-Oct-2023
Version number26