org.expasy.bprg
Class PeptideQuantiInfos

java.lang.Object
  extended by org.expasy.bprg.PeptideQuantiInfos

public class PeptideQuantiInfos
extends java.lang.Object

Author:
chernand

Constructor Summary
PeptideQuantiInfos()
           
 
Method Summary
 void collectInfos(PhenyxSILACPeptide phenyxPeptide, SilacQuantiParam params)
           
 double getC12Areas()
           
 double[] getC13Areas()
           
 java.lang.String getForm()
           
 double getHeavyMass()
           
 double[][] getIntermAreas()
           
 double[] getIntermMasses()
           
 int getLabeledAANumber()
           
 double getLightMass()
           
 java.lang.String getMasses()
           
 java.lang.String getPeptideString()
           
 java.lang.String getProteinName()
           
 double getSumHeavyForms()
           
 double getSumLightForms()
          Return only C12 value (was also adding c12-1Da and c12-2Da)
 boolean isFileFound()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PeptideQuantiInfos

public PeptideQuantiInfos()
Method Detail

collectInfos

public void collectInfos(PhenyxSILACPeptide phenyxPeptide,
                         SilacQuantiParam params)

getSumLightForms

public double getSumLightForms()
Return only C12 value (was also adding c12-1Da and c12-2Da)


getSumHeavyForms

public double getSumHeavyForms()

getMasses

public java.lang.String getMasses()
Returns:
the masses

getForm

public java.lang.String getForm()
Returns:
the form

getLabeledAANumber

public int getLabeledAANumber()
Returns:
the labeledAANumber

getPeptideString

public java.lang.String getPeptideString()
Returns:
the peptideString

getProteinName

public java.lang.String getProteinName()
Returns:
the proteinName

getC12Areas

public double getC12Areas()
Returns:
the c12Areas

getC13Areas

public double[] getC13Areas()
Returns:
the c13Areas

getHeavyMass

public double getHeavyMass()
Returns:
the heavyMass

getIntermAreas

public double[][] getIntermAreas()
Returns:
the intermAreas

getIntermMasses

public double[] getIntermMasses()
Returns:
the intermMasses

getLightMass

public double getLightMass()
Returns:
the lightMass

isFileFound

public boolean isFileFound()
Returns:
the fileFound