org.expasy.bprg
Class PhenyxSILACPeptide

java.lang.Object
  extended by org.expasy.bprg.PhenyxSILACPeptide

public class PhenyxSILACPeptide
extends java.lang.Object

Author:
chernand

Constructor Summary
PhenyxSILACPeptide(jxl.Cell[] identRowData)
           
 
Method Summary
 int getAACount(char[] labels)
           
 int[] getAACounts(char[] labels)
           
 int getAAPresent(char[] labels)
           
 java.lang.String getDescription()
           
 java.lang.Iterable<java.lang.String> getModifsExcept(java.lang.String exceptedLabel)
           
 java.lang.Iterable<java.lang.String> getModifsExcept(java.lang.String[] exceptedLabels)
           
 double getPeptideMass()
           
 java.lang.String getPeptideString()
           
 java.lang.String getProteinName()
           
 java.lang.String getSpectrumId()
           
 java.lang.String getSpectrumLabel()
           
 boolean isLabeledWith(java.lang.String label)
           
 boolean[] isLabeledWith(java.lang.String[] labels)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PhenyxSILACPeptide

public PhenyxSILACPeptide(jxl.Cell[] identRowData)
Method Detail

isLabeledWith

public boolean isLabeledWith(java.lang.String label)

isLabeledWith

public boolean[] isLabeledWith(java.lang.String[] labels)

getAACount

public int getAACount(char[] labels)

getAACounts

public int[] getAACounts(char[] labels)

getAAPresent

public int getAAPresent(char[] labels)

getSpectrumId

public java.lang.String getSpectrumId()

getSpectrumLabel

public java.lang.String getSpectrumLabel()

getModifsExcept

public java.lang.Iterable<java.lang.String> getModifsExcept(java.lang.String exceptedLabel)
Parameters:
modifsCell -
Returns:

getModifsExcept

public java.lang.Iterable<java.lang.String> getModifsExcept(java.lang.String[] exceptedLabels)
Parameters:
modifsCell -
Returns:

getDescription

public java.lang.String getDescription()
Returns:
the description

getPeptideMass

public double getPeptideMass()
Returns:
the peptideMass

getPeptideString

public java.lang.String getPeptideString()
Returns:
the peptideString

getProteinName

public java.lang.String getProteinName()
Returns:
the proteinName