References
Expasy PeptideCutter tool:
Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., Bairoch A.;
Protein Identification and Analysis Tools on the Expasy Server;
(In)
John M. Walker (ed): The Proteomics Protocols Handbook, Humana Press (2005).
Full text - Copyright Humana Press.
Proteases:
- Barrett A., Rawlings N.D., Woessner J.F.
Handbook of proteolytic enzymes.
Academic Press (1998)
- Birktoft J.J., Breddam K.
Glutamyl endopeptidases.
Methods
of Enzymology (1994) 244: 114-126.
- Bornstein P., Balian G.
Cleavage at Asn-Gly bonds with hydroxylamine.
Methods in Enzymology (1977) 47: 132- 144
- Degani Y., Patchornik A.
Cyanylation of sulfhydryl groups by 2-nitro-5-thiocyanobenzoic acid. High-yield
modification and cleavage of peptides at cysteine residues.
Biochemistry
(1974) 13: 1-11.
- Earnshaw W.C., Martins L.M., Kaufmann S.H.
Mammalian caspases: Structure, activation, substrates, and functions during
apoptosis.
Annual Review of Biochemistry (1999) 68: 383-424.
- Fulop V., Bocskei Z., Polgar L.
Prolyl oligopeptidase: an unusual beta-propeller domain regulates proteolysis
Cell (1998) 94: 161-170.
- Fujikawa K., Titani K., Davie E.W.
Activation of bovine factor X (Stuart factor): conversion of factor Xa
alpha to factor Xa beta.
Proceedings
of the National Academy of Science of the United States of America. (1975)
72: 3359-3363.
- Houmard J., Drapeau G.R.
Staphylococcal protease: a proteolytic enzyme specific for glutamoyl bonds.
Proceedings
of the National Academy of Science of the United States of America (1972)
69: 3506-3509.
- Han, K.K et al.
Current developments in chemical cleavage of proteins.
International Journal of Biochemistry (1983) 15(7): 875-884.
- Keil, B.
Protein and Nucleic Acid Enzymology (1986) 6: 11.
- Keil, B.
Proteolysis Data Bank: specificity of alpha-chymotrypsin from computation
of protein cleavages.
Protein Sequence Data Analysis (1987 ) 1: 13-21.
- Keil, B.
Specificity of proteolysis.
Springer-Verlag Berlin-Heidelberg-NewYork, pp.335. (1992)
- Keil, B., Tong T.N.
LYSIS.
Springer-Verlag Berlin-Heidelberg-NewYork, diskette set. (1992)
- Li, A. et al.
Chemical cleavage at aspartyl residues for protein identification.
Anal Chem. (2001) 73: 5395-5402
- Roche
Enterokinase product description
http://www.roche-applied-science.com/proddata/gpip/3_1_3_7_10_1.html
- Schechter I. & Berger A.
On the size of the active site in proteases. I. Papain.
Biochemical
and Biophysical Research Communication (1967) 27: 157.
- Schechter I. & Berger A.
On the active site of proteases. 3. Mapping the active site of papain;
specific peptide inhibitors of papain.
Biochemical
and Biophysical Research Communication (1968) 32: 898.
- Schroeder W.A., Shelton J.B., Shelton J.R.
An examination of conditions for the cleavage of polypeptide chains with
cyanogen bromide: application to catalase.
Archives
of Biochemistry and Biophysics (1969) 130: 551-556.
- Stennicke H.R., Renatus M., Meldal M., Salvesen G.S.
Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1,3,6,7 and 8.
Biochem. J. (2000) 350: 563-568.
- Talanian R.V., Quinlan C., Trautz S., Hackett
M.C., Mankovich J.A., Banach D., Ghayur T., Brady K.D., Wong W.W.
Substrate specificities of caspase family proteases.
Journal
of Biological Chemistry (1997) 272: 9677- 9682.
- Thornberry N.A., Rano T.A., Peterson E.P., Rasper
D.M., Timkey T. et al.
A combinatorial approach defines specificities of members of the caspase
family and Granzyme B.
Journal
of Biological Chemistry (1997) 272: 17907- 17911.
- Kapust R.B., Tozser J., Copeland T.D., Waugh D.S.
The P1' specificity of tobacco etch virus protease.
Biochem Biophys Res Commun. (2002) 294: 949-955.
- Waugh D.S.
TEV protease FAQ.
http://mcl1.ncifcrf.gov/waugh_tech/faq/tev.pdf