PRATT documentation

PRATT is a tool to discover patterns that are conserved in a set of protein sequences. The patterns are reported using the PROSITE format.

This simple interface allows the user to paste a set of sequences that are searched for patterns, using default PRATT parameters. Advanced users may modify the parameters, or are encouraged to use the more advanced EBI PRATT server.

Input a set of several sequences or an alignment in any format (such as FASTA):

Input is: a set of sequences an alignment (-G AL option).

The pattern must match:

Directly submit best pattern to ScanProsite

Additional command-line parameters for pratt:
(e.g. -CM 2 -PL 10, optional, see help)

PRATT References: