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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P08100: Variant p.Thr342Met

Rhodopsin
Gene: RHO
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Variant information Variant position: help 342 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Threonine (T) to Methionine (M) at position 342 (T342M, p.Thr342Met). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (T) to medium size and hydrophobic (M) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In RP4. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 342 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 348 The length of the canonical sequence.
Location on the sequence: help CCGKNPLGDDEASATVSKTE T SQVAPA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         CCGKNPLGDDE-ASATVSKTE-----TSQVAPA

                              CCGKNPLGDDE-ASASASKTE-----T

Mouse                         CCGKNPLGDDD-ASATASKTE-----T

Rat                           CCGKNPLGDDE-ASATASKTE-----T

Pig                           CCGKNPLGDDE-ASTTTSKTE-----T

Bovine                        CCGKNPLGDDE-ASTTVSKTE-----T

Rabbit                        CCGKNPLGDDE-ASATASKTE-----T

Sheep                         CCGKNPLGDDE-ASTTVSKTE-----T

Cat                           CCGKNPLGDDE-ASTTGSKTE-----T

Chicken                       CCGKNPLGDED---TSAGKTETSSVST

Xenopus laevis                CCGKNPFGDEDGSSAATSKTEASSVSS

Zebrafish                     CCGKNPFEEEEGASTTASKTEASSVSS
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 348 Rhodopsin
Topological domain 310 – 348 Cytoplasmic
Region 330 – 348 Interaction with SAG
Modified residue 334 – 334 Phosphoserine
Modified residue 336 – 336 Phosphothreonine
Modified residue 338 – 338 Phosphoserine
Modified residue 340 – 340 Phosphothreonine
Modified residue 342 – 342 Phosphothreonine
Modified residue 343 – 343 Phosphoserine
Lipidation 322 – 322 S-palmitoyl cysteine
Lipidation 323 – 323 S-palmitoyl cysteine
Mutagenesis 343 – 343 S -> A. Loss of phosphorylation sites and decreased interaction with SAG; when associated with 336-A--A-338.



Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.