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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P07202: Variant p.Ala257Ser

Thyroid peroxidase
Gene: TPO
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Variant information Variant position: help 257 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Alanine (A) to Serine (S) at position 257 (A257S, p.Ala257Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and hydrophobic (A) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 257 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 933 The length of the canonical sequence.
Location on the sequence: help IDHDIAFTPQSTSKAAFGGG A DCQMTCENQNPCFPIQLPEE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         IDHDIAFTPQSTSKAAFGGGADCQMTCENQNPCFPIQLPEE

                              IDHDVAFTPQSASGAAFGAGADCQLTCENRSPCFPIQLPPD

Mouse                         IDHDIALTPQSTSTAAFWGGVDCQLTCENQNPCFPIQLPSN

Rat                           IDHDIALTPQSTSTAAFWGGVDCQLTCENQNPCFPIQLPSN

Pig                           IDHDIAFTPQSTSKAAFAGGADCQLTCENRSPCFPIQLPTN

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 19 – 933 Thyroid peroxidase
Topological domain 19 – 846 Extracellular
Active site 239 – 239 Proton acceptor
Binding site 238 – 238 covalent
Binding site 240 – 240



Literature citations
Submission
Rapoport B.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); VARIANT SER-257; Homo sapiens thyroid peroxidase (TPO) variant mRNA, alternatively spliced sequence.
Hennen G.P.; Igout A.; Melen L.B.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5); VARIANTS SER-257; PRO-725 AND ALA-847; Identification of five novel inactivating mutations in the human thyroid peroxidase gene by denaturing gradient gel electrophoresis.
Bikker H.; Vulsma T.; Baas F.; de Vijlder J.J.M.;
Hum. Mutat. 6:9-16(1995)
Cited for: VARIANTS TDH2A ASP-453; SER-590 AND LYS-799; VARIANTS SER-257; SER-373; THR-398 AND PRO-725;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.