UniProtKB/Swiss-Prot P03915: Variant p.Gly146Asp

NADH-ubiquinone oxidoreductase chain 5
Gene: MT-ND5
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Variant information Variant position:

146 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glycine (G) to Aspartate (D) at position 146 (G146D, p.Gly146Asp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from glycine (G) to medium size and acidic (D) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Sequence information Variant position:

146 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

603 The length of the canonical sequence.
Location on the sequence:

ITMLILVTANNLFQLFIGWE G VGIMSFLLISWWYARADANT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANT

Gorilla                       ITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYARTDANT

                              ITMMVLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANT

Chimpanzee                    ITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARTDANT

Mouse                         ITMLILTSANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANT

Rat                           ITMLILTSANNLFQLFIGWEGVGIMSFLLIGWWYGRADANT

Pig                           ITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANT

Bovine                        ITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRADANT

Rabbit                        ITMLILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT

Sheep                         ITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT

Cat                           ITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRADANT

Horse                         ITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT

Chicken                       IAMLTLTIANNMFLLFVGWEGVGIMSFLLIGWWQGRAEANT

                              ITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARTDANT

Xenopus laevis                VAMVILVTANNFFQFFIGWEGVGIMSFLLIGWWYARAEPNT

Zebrafish                     MSMIILVTANNLFQLFIGWEGVGIMSFLLIGWWFGRTEANT

Caenorhabditis elegans        GSMFSLNFSNSIFTMLLSWDLLGISSFFLV-LFYNNWDSCS

Drosophila                    LSMMLLIISPNLISILLGWDGLGLVSYCLV-IYFQNIKSYN

Slime mold                    FFMMLLVTADNFVQLFFGWEGVGIMSYLLINFWYTRLQANK

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 603	NADH-ubiquinone oxidoreductase chain 5
Transmembrane	144 – 160	Helical

Literature citations
Normal variants of human mitochondrial DNA and translation products: the building of a reference data base.
Marzuki S.; Noer A.S.; Lertrit P.; Thyagarajan D.; Kapsa R.; Utthanaphol P.; Byrne E.;
Hum. Genet. 88:139-145(1991)
Cited for: VARIANTS SER-17; SER-95; PRO-99; ASP-146; VAL-160; SER-165; SER-304; ALA-331 AND GLY-503;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.