UniProtKB/Swiss-Prot P03915: Variant p.Phe304Ser

NADH-ubiquinone oxidoreductase chain 5
Gene: MT-ND5
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Variant information Variant position:

304 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Phenylalanine (F) to Serine (S) at position 304 (F304S, p.Phe304Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and aromatic (F) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs1603224108 [ dbSNP | Ensembl ]

Sequence information Variant position:

304 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

603 The length of the canonical sequence.
Location on the sequence:

TTLFAAVCALTQNDIKKIVA F STSSQLGLMMVTIGINQPHL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL

Gorilla                       TTLFAAVCALTQNDIKKIVAFSTSSQLGLMVATIGIGQPHL

                              TTLFTAICALTQNDIKEIVSFSTSSQLGLMMVTIGINQPYL

Chimpanzee                    TTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL

Mouse                         TTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHL

Rat                           TTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL

Pig                           TTLFTALCAITQNDIKKIVAFSTSSQLGLMMVTIGINQPHL

Bovine                        TTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVTIGINQPYL

Rabbit                        TTLFTALCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL

Sheep                         TTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVTIGINQPHL

Cat                           TTLFTAICALTQNDIKKVVAFSTSSQLGLMIVTIGINQPYL

Horse                         TTLFTAICALTQNDIKKIIAFSTSSQLGLMIVTIGINQPYL

Chicken                       STLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLDLPQL

                              TTLFAAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL

Xenopus laevis                TTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGL-IFQL

Zebrafish                     TTLFAATCALTQNDIKKIVAFSTSSQLGLMMVAIGLNQPHL

Caenorhabditis elegans        TMFFSSLASLVEEDLKKVVALSTLSQMGFSMVTLGLGLSFI

Drosophila                    TMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFLKL

Slime mold                    TTLFATTIGIVQNDIKRVIAYSTCSQLGYMIFACGLLNYNA

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 603	NADH-ubiquinone oxidoreductase chain 5
Transmembrane	301 – 320	Helical

Literature citations
Normal variants of human mitochondrial DNA and translation products: the building of a reference data base.
Marzuki S.; Noer A.S.; Lertrit P.; Thyagarajan D.; Kapsa R.; Utthanaphol P.; Byrne E.;
Hum. Genet. 88:139-145(1991)
Cited for: VARIANTS SER-17; SER-95; PRO-99; ASP-146; VAL-160; SER-165; SER-304; ALA-331 AND GLY-503;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.