UniProtKB/Swiss-Prot P57727: Variant p.Ile253Val

Transmembrane protease serine 3
Gene: TMPRSS3
Chromosomal location: 21q22.3
Variant information

Variant position:  253
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Polymorphism
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants have been found in patients and disease-association is reported in literature. However, this classification is not a definitive assessment of variant pathogenicity.
  • Polymorphism: No disease-association has been reported.
  • Unclassified: Variants have been found in patients but disease-association remains unclear.

Residue change:  From Isoleucine (I) to Valine (V) at position 253 (I253V, p.Ile253Val).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are medium size and hydrophobic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  253
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  454
The length of the canonical sequence.

Location on the sequence:   SLQFQGYHLCGGSVITPLWI  I TAAHCVYDLYLPKSWTIQVG
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         SLQFQGYHLCGGSVITPLWIITAAHCVYDLYLPKSWTIQVG

Mouse                         SLQFQGYHLCGGSIITPLWIVTAAHCVYDLYHPKSWTVQVG

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 454 Transmembrane protease serine 3
Topological domain 70 – 454 Extracellular
Domain 217 – 449 Peptidase S1
Active site 257 – 257 Charge relay system
Disulfide bond 207 – 324
Disulfide bond 242 – 258


Literature citations

Novel mutations of TMPRSS3 in four DFNB8/B10 families segregating congenital autosomal recessive deafness.
Ben-Yosef T.; Wattenhofer M.; Riazuddin S.; Ahmed Z.M.; Scott H.S.; Kudoh J.; Shibuya K.; Antonarakis S.E.; Bonne-Tamir B.; Radhakrishna U.; Naz S.; Ahmed Z.; Riazuddin S.; Pandya A.; Nance W.E.; Wilcox E.R.; Friedman T.B.; Morell R.J.;
J. Med. Genet. 38:396-400(2001)
Cited for: VARIANTS DFBN8 TRP-109; PHE-194 AND ARG-407; VARIANTS ILE-53; SER-111 AND VAL-253;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.