UniProtKB/Swiss-Prot P01138: Variant p.Ala35Val

Beta-nerve growth factor
Gene: NGF
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Variant information Variant position:

35 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Valine (V) at position 35 (A35V, p.Ala35Val). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and hydrophobic (V) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs6330 [ dbSNP | Ensembl ]

Sequence information Variant position:

35 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

241 The length of the canonical sequence.
Location on the sequence:

GIQAEPHSESNVPAGHTIPQ A HWTKLQHSLDTALRRARSAP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GIQAEPHSESNVP----AGHTIP-QAHWTKLQHSLDTALRRARSAP

Gorilla                       GIQAELHSESNVP----AGHTIP-QAHWTKLQHSLDTALRR

Chimpanzee                    GTQAEPHSESNVP----AGHTIP-QAHWTKLQHSLDTALRR

Mouse                         GVQAEPYTDSNVP----EGDSVP-EAHWTKLQHSLDTALRR

Rat                           GVQAEPYTDSNVP----EGDSVP-EAHWTKLQHSLDTALRR

Bovine                        GIQAAPHTESNVP----AGHAIP-QAHWIKLQHSLDTVLRR

Chicken                       GTQAAPKSEDNGPLEYPAEHSLP-STQQSNGQHIAKAAPQT

Xenopus laevis                SVQAAPKTKDHAPARSSAKSRIPHHTHRTKSLHHSHGKLE-

Zebrafish                     SCSQTFAQR--------PGDICPQNPHHGQDV--------T

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Propeptide	19 – 121

Literature citations
Human beta-nerve growth factor gene sequence highly homologous to that of mouse.
Ullrich A.; Gray A.; Berman C.; Dull T.J.;
Nature 303:821-825(1983)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANT VAL-35; Sequence homology of human and mouse beta-NGF subunit genes.
Ullrich A.; Gray A.; Berman C.; Coussens L.; Dull T.J.;
Cold Spring Harb. Symp. Quant. Biol. 48:435-442(1983)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANT VAL-35; cDNA sequence of human beta-NGF.
Borsani G.; Pizzuti A.; Rugarli E.I.; Falini A.; Silani V.; Sidoli A.; Scarlato G.; Barelle F.E.;
Nucleic Acids Res. 18:4020-4020(1990)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT VAL-35; Human-specific amino acid changes found in 103 protein-coding genes.
Kitano T.; Liu Y.-H.; Ueda S.; Saitou N.;
Mol. Biol. Evol. 21:936-944(2004)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANT VAL-35; Submission
Mural R.J.; Istrail S.; Sutton G.G.; Florea L.; Halpern A.L.; Mobarry C.M.; Lippert R.; Walenz B.; Shatkay H.; Dew I.; Miller J.R.; Flanigan M.J.; Edwards N.J.; Bolanos R.; Fasulo D.; Halldorsson B.V.; Hannenhalli S.; Turner R.; Yooseph S.; Lu F.; Nusskern D.R.; Shue B.C.; Zheng X.H.; Zhong F.; Delcher A.L.; Huson D.H.; Kravitz S.A.; Mouchard L.; Reinert K.; Remington K.A.; Clark A.G.; Waterman M.S.; Eichler E.E.; Adams M.D.; Hunkapiller M.W.; Myers E.W.; Venter J.C.;
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]; VARIANT VAL-35; The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT VAL-35; Characterization of single-nucleotide polymorphisms in coding regions of human genes.
Cargill M.; Altshuler D.; Ireland J.; Sklar P.; Ardlie K.; Patil N.; Shaw N.; Lane C.R.; Lim E.P.; Kalyanaraman N.; Nemesh J.; Ziaugra L.; Friedland L.; Rolfe A.; Warrington J.; Lipshutz R.; Daley G.Q.; Lander E.S.;
Nat. Genet. 22:231-238(1999)
Cited for: VARIANT VAL-35;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.