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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P12259: Variant p.His1327Arg

Coagulation factor V
Gene: F5
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Variant information Variant position: help 1327 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Histidine (H) to Arginine (R) at position 1327 (H1327R, p.His1327Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (H) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1327 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 2224 The length of the canonical sequence.
Location on the sequence: help LSQTNLSPALGQMPISPDLS H TTLSLDFSQTNLSPELSQTN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         LSQTNLSPALGQMPISPDLSHTTLSLDFSQTNLSPELSQTN

Mouse                         LGQVPLSSD----------NQKTSSPDLGQVPLFPEDNQNY

Pig                           LGHTTLSPDLGHTTLSPDFSQTTLSPDLGHTTLSSDVSHTT

Bovine                        LGQTALSPDP---------SQESLSPDLGQTALSPDPSQES

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 29 – 2224 Coagulation factor V
Propeptide 738 – 1573 Activation peptide (connecting region)
Repeat 1320 – 1328 2-16
Region 692 – 1573 B
Region 1185 – 1501 35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T



Literature citations
Detection of new polymorphic markers in the factor V gene: association with factor V levels in plasma.
Lunghi B.; Iacoviello L.; Gemmati D.; Dilasio M.G.; Castoldi E.; Pinotti M.; Castaman G.; Redaelli R.; Mariani G.; Marchetti G.; Bernardi F.;
Thromb. Haemost. 75:45-48(1996)
Cited for: VARIANTS ILE-1285 AND ARG-1327; Combinations of 4 mutations (FV R506Q, FV H1299R, FV Y1702C, PT 20210G/A) affecting the prothrombinase complex in a thrombophilic family.
Castoldi E.; Simioni P.; Kalafatis M.; Lunghi B.; Tormene D.; Girelli D.; Girolami A.; Bernardi F.;
Blood 96:1443-1448(2000)
Cited for: VARIANT FA5D CYS-1730; VARIANT THPH2 GLN-534; VARIANT ARG-1327;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.