UniProtKB/Swiss-Prot P17661: Variant p.Gln389Pro

Desmin
Gene: DES
Chromosomal location: 2q35
Variant information

Variant position:  389
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants have been found in patients and disease-association is reported in literature. However, this classification is not a definitive assessment of variant pathogenicity.
  • Polymorphism: No disease-association has been reported.
  • Unclassified: Variants have been found in patients but disease-association remains unclear.

Residue change:  From Glutamine (Q) to Proline (P) at position 389 (Q389P, p.Gln389Pro).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and polar (Q) to medium size and hydrophobic (P)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In MFM1.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  389
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  470
The length of the canonical sequence.

Location on the sequence:   RLEEEIRHLKDEMARHLREY  Q DLLNVKMALDVEIATYRKLL
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Mouse                         RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Rat                           RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Pig                           RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Bovine                        RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Dog                           RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Chicken                       RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLL

Xenopus laevis                RLEEEIRNMKDEMARHLREYQDLLNVKMALDMEIATYRKLL

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 470 Desmin
Region 109 – 412 Rod
Region 296 – 412 Coil 2B


Literature citations

Structural and functional analysis of a new desmin variant causing desmin-related myopathy.
Goudeau B.; Dagvadorj A.; Rodrigues-Lima F.; Nedellec P.; Casteras-Simon M.; Perret E.; Langlois S.; Goldfarb L.; Vicart P.;
Hum. Mutat. 18:388-396(2001)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT MFM1 PRO-389;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.