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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q7Z494: Variant p.Ser1314Thr

Nephrocystin-3
Gene: NPHP3
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Variant information Variant position: help 1314 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Threonine (T) at position 1314 (S1314T, p.Ser1314Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In NPHP3; likely benign. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1314 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1330 The length of the canonical sequence.
Location on the sequence: help ETSLLGGKAPSRHSSSGDTF S LKTAHSPNVFLQQGQR The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         ETSLLGGKAPSRHSSS-GDTFSLKTAHSPNVFLQQGQR

Mouse                         ETSLLGGKAPSRQSSS-GDTFLFKTTHSPNVFLPQGQ

Xenopus laevis                ETSVLGAKAPSGHSSSGGDTYSVQNTLPVSVFPE---

Xenopus tropicalis            ETSVLGAKAHSGHSSSGGDTYSVQNALPVCAFPE---

Zebrafish                     EPSLVCGKAPSRHSSS-GDTFSMRSPALPNASR----
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 2 – 1330 Nephrocystin-3
Region 1296 – 1330 Disordered
Compositional bias 1301 – 1330 Polar residues
Alternative sequence 151 – 1330 Missing. In isoform 7.
Alternative sequence 182 – 1330 Missing. In isoform 4.
Alternative sequence 240 – 1330 Missing. In isoform 5.
Alternative sequence 637 – 1330 Missing. In isoform 3.
Alternative sequence 705 – 1330 Missing. In isoform 6.
Alternative sequence 1330 – 1330 R -> RKVQSNLLSPEGLSNICAQEKTTRFTSS. In isoform 2.



Literature citations
Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis.
Olbrich H.; Fliegauf M.; Hoefele J.; Kispert A.; Otto E.; Volz A.; Wolf M.T.; Sasmaz G.; Trauer U.; Reinhardt R.; Sudbrak R.; Antignac C.; Gretz N.; Walz G.; Schermer B.; Benzing T.; Hildebrandt F.; Omran H.;
Nat. Genet. 34:455-459(2003)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); NUCLEOTIDE SEQUENCE [MRNA] OF 117-1330; NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5); NUCLEOTIDE SEQUENCE [MRNA] OF 584-1330 (ISOFORM 3); INTERACTION WITH NPHP1; TISSUE SPECIFICITY; VARIANTS NPHP3 THR-360; SER-386; HIS-397; PRO-1141; VAL-1221; ARG-1252 AND THR-1314;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.