Variant position: 3245 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 3354 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human LKKLFAQRMVQKASSCHSSI SELIQTELDEEPGDHSPGQGS
Mouse LKKLFAQRMVQKASSCHSSI SELIHTDLEEEPGDHSPGQGS
Rat -------------------- --LIHTDLEEEPGDHSPGQGS
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
24 – 3354 Cadherin-23
3086 – 3354 Cytoplasmic
531 – 3354 Missing. In isoform 5.
1213 – 3354 Missing. In isoform 6.
3212 – 3246 Missing. In isoform 4, isoform 9 and isoform 11.
Characterization of Usher syndrome type I gene mutations in an Usher syndrome patient population.
Ouyang X.M.; Yan D.; Du L.L.; Hejtmancik J.F.; Jacobson S.G.; Nance W.E.; Li A.R.; Angeli S.; Kaiser M.; Newton V.; Brown S.D.M.; Balkany T.; Liu X.Z.;
Hum. Genet. 116:292-299(2005)
Cited for: VARIANTS USH1D THR-366; ALA-1209; GLN-1507; TRP-3189 AND PHE-3245;
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