UniProtKB/Swiss-Prot P01562: Variant p.Val10Ala

Interferon alpha-1/13
Gene: IFNA13
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Variant information Variant position:

10 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Valine (V) to Alanine (A) at position 10 (V10A, p.Val10Ala). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (V) to small size and hydrophobic (A) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism:

Two forms exist; alpha-1a (shown here) and alpha-1b (PubMed:11032395). Additional information on the polymorphism described.
Other resources:

Links to websites of interest for the variant.

Variant rs1758567 [ dbSNP | Ensembl ]

Sequence information Variant position:

10 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

189 The length of the canonical sequence.
Location on the sequence:

MASPFALLM V LVVLSCKSSCSLGCDLPETH The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         MASPFA---------LLMVLVVLSCKSSCSLGCDLPETH

                              MALPCS---------FSVALVLLSCHSLCC

Mouse                         MARLCA---------FLMVLAVLSYWPTCS

Rat                           MARLCA---------FLMSLVVVSYWSACC

Pig                           MAPTSA---------FLTALVLLSCNAICS

Bovine                        MAPAWS---------LLLALLLLSCNAICS

Horse                         MALPVS---------LLMALVVLSCHSICS

Chicken                       MAVPASPQHPRGYGILLLTLLLKALATTAS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Signal peptide	1 – 23

Literature citations
Submission
Rostoks N.;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANT ALA-10; Submission
NIEHS SNPs program;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS ALA-10; VAL-137 AND GLY-163; The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT ALA-10;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.