To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https

UniProtKB/Swiss-Prot P51531: Variant p.Asp1546Glu

Probable global transcription activator SNF2L2
Gene: SMARCA2
Chromosomal location: 9p22.3
Variant information

Variant position:  1546
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Polymorphism
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Aspartate (D) to Glutamate (E) at position 1546 (D1546E, p.Asp1546Glu).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are medium size and acidic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  Polymorphism; associated with schizophrenia in some populations; results in reduced localization to the nucleus; decreased interaction with chromatin.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  1546
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1590
The length of the canonical sequence.

Location on the sequence:   EESESEAKSVKVKIKLNKKD  D KGRDKGKGKKRPNRGKAKPV
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         EESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPV

Mouse                         EESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKPV

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 1590 Probable global transcription activator SNF2L2
Modified residue 1528 – 1528 Phosphoserine


Literature citations

Involvement of SMARCA2/BRM in the SWI/SNF chromatin-remodeling complex in schizophrenia.
Koga M.; Ishiguro H.; Yazaki S.; Horiuchi Y.; Arai M.; Niizato K.; Iritani S.; Itokawa M.; Inada T.; Iwata N.; Ozaki N.; Ujike H.; Kunugi H.; Sasaki T.; Takahashi M.; Watanabe Y.; Someya T.; Kakita A.; Takahashi H.; Nawa H.; Muchardt C.; Yaniv M.; Arinami T.;
Hum. Mol. Genet. 18:2483-2494(2009)
Cited for: PROBABLE INVOLVEMENT IN SCZD; VARIANT GLU-1546; CHARACTERIZATION OF VARIANT GLU-1546;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.