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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q6EMB2: Variant p.Phe1267Ser

Tubulin polyglutamylase TTLL5
Gene: TTLL5
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Variant information Variant position: help 1267 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Phenylalanine (F) to Serine (S) at position 1267 (F1267S, p.Phe1267Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and aromatic (F) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1267 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1281 The length of the canonical sequence.
Location on the sequence: help KGSSAEGQLNGLQSSLNPAA F VPITSSTDPAHTKI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         KGSSAEGQLNGLQSSLNPAAFVPITSSTD---------------PAHT------------------KI

Mouse                         KGSSAEGQLNGLQSSLNPAAFMPITNSTGSLEAPQ

Caenorhabditis elegans        -----------------------------------

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1281 Tubulin polyglutamylase TTLL5
Region 1199 – 1281 Disordered
Compositional bias 1236 – 1281 Polar residues
Alternative sequence 270 – 1281 Missing. In isoform 3.
Alternative sequence 1247 – 1281 KGSSAEGQLNGLQSSLNPAAFVPITSSTDPAHTKI -> NTRFRSSFQNYLWYFFQAVS. In isoform 2.



Literature citations
STAMP, a novel predicted factor assisting TIF2 actions in glucocorticoid receptor-mediated induction and repression.
He Y.; Simons S.S. Jr.;
Mol. Cell. Biol. 27:1467-1485(2007)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); FUNCTION; SUBCELLULAR LOCATION; INTERACTION WITH NCOA1 AND NCOA2; TISSUE SPECIFICITY; VARIANTS VAL-149 AND SER-1267; Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.
Nagase T.; Ishikawa K.; Suyama M.; Kikuno R.; Hirosawa M.; Miyajima N.; Tanaka A.; Kotani H.; Nomura N.; Ohara O.;
DNA Res. 6:63-70(1999)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 56-1281 (ISOFORM 1); VARIANTS VAL-149 AND SER-1267;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.