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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9Y5Y9: Variant p.Cys1523Tyr

Sodium channel protein type 10 subunit alpha
Gene: SCN10A
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Variant information Variant position: help 1523 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Cysteine (C) to Tyrosine (Y) at position 1523 (C1523Y, p.Cys1523Tyr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (C) to large size and aromatic (Y) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help No gain in function in response to depolarization. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1523 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1956 The length of the canonical sequence.
Location on the sequence: help EKTKILGKINQFFVAVFTGE C VMKMFALRQYYFTNGWNVFD The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1956 Sodium channel protein type 10 subunit alpha
Transmembrane 1507 – 1530 Helical; Name=S2 of repeat IV
Repeat 1458 – 1757 IV
Helix 1502 – 1529



Literature citations
Gain-of-function Nav1.8 mutations in painful neuropathy.
Faber C.G.; Lauria G.; Merkies I.S.; Cheng X.; Han C.; Ahn H.S.; Persson A.K.; Hoeijmakers J.G.; Gerrits M.M.; Pierro T.; Lombardi R.; Kapetis D.; Dib-Hajj S.D.; Waxman S.G.;
Proc. Natl. Acad. Sci. U.S.A. 109:19444-19449(2012)
Cited for: VARIANTS FEPS2 PRO-554 AND THR-1304; CHARACTERIZATION OF VARIANTS FEPS2 PRO-554 AND THR-1304; VARIANTS LEU-939; LEU-940; ASN-1056; TYR-1523 AND SER-1662; CHARACTERIZATION OF VARIANT TYR-1523; FUNCTION; TRANSPORTER ACTIVITY;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.