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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9HC78: Variant p.Lys590Gln

Zinc finger and BTB domain-containing protein 20
Gene: ZBTB20
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Variant information Variant position: help 590 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Lysine (K) to Glutamine (Q) at position 590 (K590Q, p.Lys590Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (K) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In PRIMS; does not affect subcellular location; strongly reduced DNA binding; reduced ability to repress transcription; dominant-negative effect of the mutant on the wild-type allele. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 590 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 741 The length of the canonical sequence.
Location on the sequence: help SGQGEKKPYECTLCNKTFTA K QNYVKHMFVHTGEKPHQCSI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         SGQGEKKPYECTLCNKTFTAKQNYVKHMFVHTGEKPHQCSI

Mouse                         SGQGDKKPYECTLCNKTFTAKQNYVKHMFVHTGEKPHQCSI
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 741 Zinc finger and BTB domain-containing protein 20
Zinc finger 578 – 600 C2H2-type 1



Literature citations
Mutations in ZBTB20 cause Primrose syndrome.
Cordeddu V.; Redeker B.; Stellacci E.; Jongejan A.; Fragale A.; Bradley T.E.; Anselmi M.; Ciolfi A.; Cecchetti S.; Muto V.; Bernardini L.; Azage M.; Carvalho D.R.; Espay A.J.; Male A.; Molin A.M.; Posmyk R.; Battisti C.; Casertano A.; Melis D.; van Kampen A.; Baas F.; Mannens M.M.; Bocchinfuso G.; Stella L.; Tartaglia M.; Hennekam R.C.;
Nat. Genet. 46:815-817(2014)
Cited for: INVOLVEMENT IN PRIMS; VARIANTS PRIMS GLN-590; ARG-596; ALA-602 AND PHE-621; CHARACTERIZATION OF VARIANTS PRIMS GLN-590; ARG-596; ALA-602 AND PHE-621;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.