UniProtKB/Swiss-Prot P08865: Variant p.Ala278Thr

Small ribosomal subunit protein uS2
Gene: RPSA
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Variant information Variant position:

278 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Threonine (T) at position 278 (A278T, p.Ala278Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs143085301 [ dbSNP | Ensembl ]

Sequence information Variant position:

278 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

295 The length of the canonical sequence.
Location on the sequence:

PIQQFPTEDWSAQPATEDWS A APTAQATEWVGATTDWS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PIQQFP---------------TEDWSAQPA-TEDWSAAPTAQATEWVGATTDWS

Mouse                         PIQQFP---------------TEDWSAQPA-TEDWSAA

Rat                           PIQQFP---------------TEDWSAQPA-TEDWSAA

Pig                           PIQQFP---------------TEDWSAQPT-TEDWSAA

Bovine                        PIQQFP---------------TEDWSAQPS-TEDWSAA

Sheep                         PIQQFP---------------TEDWSARPF-TEDWSAA

Chicken                       PIQQFP---------------TEDWSAQPA-TEDWSAA

Xenopus laevis                PIQQFTA---ERTDVPPAPKPTEDWSTQPASTDDWSAA

Xenopus tropicalis            PIQQFPA---ERPEIPAAKPAAEDWSSQPASTDDWSAA

Zebrafish                     PIQQFPAGIEAPGKPAPAEVYAEDWSAQPA-TEDWSAA

Caenorhabditis elegans        ---------------------TATWTAETKTTEEWANA

Drosophila                    G----G---------------VEDWNEDTV-KTSW---

Slime mold                    ---------------------IAEWSAPDN--------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 295	Small ribosomal subunit protein uS2
Region	242 – 295	Laminin-binding
Region	266 – 295	Disordered

Literature citations
Ribosomal protein SA haploinsufficiency in humans with isolated congenital asplenia.
Bolze A.; Mahlaoui N.; Byun M.; Turner B.; Trede N.; Ellis S.R.; Abhyankar A.; Itan Y.; Patin E.; Brebner S.; Sackstein P.; Puel A.; Picard C.; Abel L.; Quintana-Murci L.; Faust S.N.; Williams A.P.; Baretto R.; Duddridge M.; Kini U.; Pollard A.J.; Gaud C.; Frange P.; Orbach D.; Emile J.F.; Stephan J.L.; Sorensen R.; Plebani A.; Hammarstrom L.; Conley M.E.; Selleri L.; Casanova J.L.;
Science 340:976-978(2013)
Cited for: INVOLVEMENT IN ICAS; VARIANTS ICAS ASN-54; PHE-58; GLY-180; TRP-180 AND CYS-186; CHARACTERIZATION OF VARIANTS ICAS ASN-54; PHE-58; GLY-180; TRP-180 AND CYS-186; VARIANTS VAL-185; GLY-257 AND THR-278;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.