UniProtKB/Swiss-Prot P04792: Variant p.Arg188Trp

Heat shock protein beta-1
Gene: HSPB1
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Variant information Variant position:

188 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Tryptophan (W) at position 188 (R188W, p.Arg188Trp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to large size and aromatic (W) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In CMT2F; uncertain significance. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs772767500 [ dbSNP | Ensembl ]

Sequence information Variant position:

188 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

205 The length of the canonical sequence.
Location on the sequence:

PMPKLATQSNEITIPVTFES R AQLGGPEAAKSDETAAK The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PMPKLATQSNEITIPVTFESRAQLGGPEAAKSDETAAK

                              PMPKPATQSAEITIPVTFEARAQIGGPEAGKSEQSGAK

Mouse                         PLPKAVTQSAEITIPVTFEARAQIGGPEAGKSEQSGAK

Rat                           PLPKAVTQSAEITIPVTFEARAQIGGPE---SEQSGAK

Pig                           PLPKPATQSAEITIPVTFEARAQLGGTEAGKSEKPGTK

Bovine                        PLPKSATQSAEITIPVTFQARAQLGGPEAGKSEQPENK

Chicken                       PLPKPAIQSSEITIPVTVEAK----------KEEPAKK

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 205	Heat shock protein beta-1
Region	70 – 205	Interaction with TGFB1I1
Modified residue	174 – 174	Phosphothreonine
Modified residue	176 – 176	Phosphoserine
Modified residue	199 – 199	Phosphoserine

Literature citations
HSPB1 and HSPB8 in inherited neuropathies: study of an Italian cohort of dHMN and CMT2 patients.
Capponi S.; Geroldi A.; Fossa P.; Grandis M.; Ciotti P.; Gulli R.; Schenone A.; Mandich P.; Bellone E.;
J. Peripher. Nerv. Syst. 16:287-294(2011)
Cited for: VARIANTS HMND3 ARG-34; LYS-41; LEU-136 AND ILE-180; VARIANTS CMT2F LEU-39; LEU-136 AND TRP-188;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.