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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q8TAB3: Variant p.Pro236Leu

Protocadherin-19
Gene: PCDH19
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Variant information Variant position: help 236 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Proline (P) to Leucine (L) at position 236 (P236L, p.Pro236Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In DEE9. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 236 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1148 The length of the canonical sequence.
Location on the sequence: help PPRLGTVGLSIKVTDSNDNN P VFSESTYAVSVPENSPPNTP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         PPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTP

Mouse                         PPHMGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNTP

Zebrafish                     PPKSGTVQLNIKVIDSNDNNPVFDEPVYTVNVLENSPINTL

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 22 – 1148 Protocadherin-19
Topological domain 22 – 678 Extracellular
Domain 130 – 238 Cadherin 2
Binding site 230 – 230
Binding site 231 – 231
Binding site 232 – 232
Binding site 233 – 233
Binding site 233 – 233
Binding site 234 – 234
Binding site 249 – 249
Binding site 249 – 249



Literature citations
Improving diagnosis and broadening the phenotypes in early-onset seizure and severe developmental delay disorders through gene panel analysis.
Trump N.; McTague A.; Brittain H.; Papandreou A.; Meyer E.; Ngoh A.; Palmer R.; Morrogh D.; Boustred C.; Hurst J.A.; Jenkins L.; Kurian M.A.; Scott R.H.;
J. Med. Genet. 53:310-317(2016)
Cited for: VARIANTS DEE9 ASN-230 AND LEU-236;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.