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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P54278: Variant p.Thr511Pro

Mismatch repair endonuclease PMS2
Gene: PMS2
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Variant information Variant position: help 511 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Threonine (T) to Proline (P) at position 511 (T511P, p.Thr511Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (T) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 511 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 862 The length of the canonical sequence.
Location on the sequence: help EKDSGHGSTSVDSEGFSIPD T GSHCSSEYAASSPGDRGSQE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         EK----DSGHGSTSVDSE-GFSIPDTGSHCSSEY-------AASSPGDRGSQE

Mouse                         EK----DSGLSSTSAGSEEGFSTPEVASSFSSDY-------

Chicken                       RKVDDIDSGFCSTS-ESDAGYNTPEAGSCVISESVNNPIEE

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 862 Mismatch repair endonuclease PMS2
Region 391 – 552 Disordered
Compositional bias 499 – 524 Polar residues
Alternative sequence 184 – 862 Missing. In isoform 4.
Alternative sequence 269 – 669 Missing. In isoform 2.
Mutagenesis 519 – 519 Y -> C. No effect on DNA mismatch repair activity.



Literature citations
Functional PMS2 hybrid alleles containing a pseudogene-specific missense variant trace back to a single ancient intrachromosomal recombination event.
Ganster C.; Wernstedt A.; Kehrer-Sawatzki H.; Messiaen L.; Schmidt K.; Rahner N.; Heinimann K.; Fonatsch C.; Zschocke J.; Wimmer K.;
Hum. Mutat. 31:552-560(2010)
Cited for: VARIANTS THR-423; MET-511 AND PRO-511;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.