Cell line name | SNU-398 | ||||||||||||||||||||||||||||||||
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Synonyms | SNU398; NCI-SNU-398 | ||||||||||||||||||||||||||||||||
Accession | CVCL_0077 | ||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: SNU-398 (RRID:CVCL_0077) | ||||||||||||||||||||||||||||||||
Comments | Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: Liver Cancer Model Repository (LIMORE). Part of: MD Anderson Cell Lines Project. Part of: Seoul National University (SNU) cell line collection. Population: Korean. Doubling time: 39 hours (PubMed=7543080); 25.49 hours (PubMed=31378681). Karyotypic information: Has lost chromosome Y. Microsatellite instability: Stable (MSS) (Sanger). Transformant: NCBI_TaxID; 10407; Hepatitis B virus (HBV). Omics: Deep exome analysis. Omics: Deep RNAseq analysis. Omics: DNA methylation analysis. Omics: Genome sequenced. Omics: miRNA expression profiling. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis. Derived from sampling site: Liver. | ||||||||||||||||||||||||||||||||
Sequence variations |
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Genome ancestry | Source: PubMed=30894373
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Disease | Adult hepatocellular carcinoma (NCIt: C7956) Adult hepatocellular carcinoma (ORDO: Orphanet_210159) | ||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human)
(NCBI Taxonomy: 9606)
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Sex of cell | Male | ||||||||||||||||||||||||||||||||
Age at sampling | 42Y | ||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||
STR profile | Source(s): ATCC; Cosmic-CLP; KCLB; PubMed=25877200; PubMed=31378681 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||
Web pages | https://lccl.zucmanlab.com/hcc/cellLines/SNU398 https://tcpaportal.org/mclp/ | ||||||||||||||||||||||||||||||||
Publications | PubMed=7543080; DOI=10.1002/ijc.2910620308 PubMed=8824565; DOI=10.1002/(SICI)1097-0215(19960917)67:6<898::AID-IJC22>3.0.CO;2-X PubMed=19956504; DOI=10.4143/crt.2005.37.1.1 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458 PubMed=22460905; DOI=10.1038/nature11003 PubMed=23505090; DOI=10.1002/hep.26402 PubMed=23887712; DOI=10.1038/ncomms3218 PubMed=25485619; DOI=10.1038/nbt.3080 PubMed=25574106; DOI=10.3748/wjg.v21.i1.311 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017 PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747 PubMed=31063779; DOI=10.1053/j.gastro.2019.05.001 PubMed=31068700; DOI=10.1038/s41586-019-1186-3 PubMed=31378681; DOI=10.1016/j.ccell.2019.07.001 | ||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||
Cell line collections | ATCC; CRL-2233
KCLB; 00398 | ||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009098
MCCL; MCC:0000435 Cell_Model_Passport; SIDM01181 Cosmic-CLP; 1240217 DepMap; ACH-000221 IGRhCellID; SNU398 LIMORE; SNU398 LINCS_LDP; LCL-1934 | ||||||||||||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0003170 | ||||||||||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN03473191
BioSample; SAMN10987942 | ||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3307619
ChEMBL-Targets; CHEMBL614454 GDSC; 1240217 PharmacoDB; SNU398_1458_2019 | ||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54955184 | ||||||||||||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0002347 | ||||||||||||||||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-38
ArrayExpress; E-MTAB-2706 ArrayExpress; E-MTAB-2770 ArrayExpress; E-MTAB-3610 GEO; GSM481448 GEO; GSM565922 GEO; GSM827415 GEO; GSM887623 GEO; GSM888708 GEO; GSM936780 GEO; GSM1374890 GEO; GSM1670468 GEO; GSM2551587 | ||||||||||||||||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 873393
Cosmic; 928143 Cosmic; 1187337 Cosmic; 1995640 Cosmic; 2009538 Cosmic; 2023868 Cosmic; 2162531 Cosmic; 2321036 Cosmic; 2771606 IARC_TP53; 6307 LiGeA; CCLE_422 Progenetix; CVCL_0077 | ||||||||||||||||||||||||||||||||
Sequence databases | EGA; EGAS00001000978 | ||||||||||||||||||||||||||||||||
Entry history | |||||||||||||||||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||||||||||||||||
Last entry update | 16-Dec-2021 | ||||||||||||||||||||||||||||||||
Version number | 31 |