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Cellosaurus SNU-638 (CVCL_0102)

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Cell line name SNU-638
Synonyms SNU638
Accession CVCL_0102
Resource Identification Initiative To cite this cell line use: SNU-638 (RRID:CVCL_0102)
Comments Part of: Seoul National University (SNU) cell line collection.
Omics: Deep exome analysis.
Omics: Deep RNAseq analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Sequence variations Heterozygous for TP53 p.Arg282Trp (c.844C>T) (PubMed=9033653).
HLA typing Source: PubMed=25960936
Class I
Class II
Disease Gastric adenocarcinoma (NCIt: C4004)
Derived from metastatic site: Ascites.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_L047 (SNU-638-5FU)CVCL_L048 (SNU-638-CIS)
Sex of cell Male
Age at sampling 48Y
Category Cancer cell line
STR profile Source(s): KCLB; PubMed=25877200

D5S81810,14 (KCLB)
10,13,14,15 (PubMed=25877200)
Penta D9
Penta E14,18

Run an STR similarity search on this cell line

PubMed=9033653; DOI=10.1002/(SICI)1097-0215(19970207)70:4<443::AID-IJC12>3.0.CO;2-G
Park J.-G., Yang H.-K., Kim W.-H., Chung J.-K., Kang M.-S., Lee J.-H., Oh J.-H., Park H.-S., Yeo K.-S., Kang S.H., Song S.-Y., Kang Y.K., Bang Y.-J., Kim Y.I., Kim J.-P.
Establishment and characterization of human gastric carcinoma cell lines.
Int. J. Cancer 70:443-449(1997)

PubMed=10812166; DOI=10.1016/S0165-4608(99)00217-4
Chun Y.-H., Kil J.-I., Suh Y.-S., Kim S.-H., Kim H., Park S.-H.
Characterization of chromosomal aberrations in human gastric carcinoma cell lines using chromosome painting.
Cancer Genet. Cytogenet. 119:18-25(2000)

PubMed=15723654; DOI=10.1111/j.1349-7006.2005.00016.x
Takada H., Imoto I., Tsuda H., Sonoda I., Ichikura T., Mochizuki H., Okanoue T., Inazawa J.
Screening of DNA copy-number aberrations in gastric cancer cell lines by array-based comparative genomic hybridization.
Cancer Sci. 96:100-110(2005)

PubMed=19956504; DOI=10.4143/crt.2005.37.1.1
Ku J.-L., Park J.-G.
Biology of SNU cell lines.
Cancer Res. Treat. 37:1-19(2005)

PubMed=24807215; DOI=10.1038/ncomms4830
Liu J., McCleland M., Stawiski E.W., Gnad F., Mayba O., Haverty P.M., Durinck S., Chen Y.-J., Klijn C., Jhunjhunwala S., Lawrence M., Liu H., Wan Y., Chopra V., Yaylaoglu M.B., Yuan W., Ha C., Gilbert H.N., Reeder J., Pau G., Stinson J., Stern H.M., Manning G., Wu T.D., Neve R.M., de Sauvage F.J., Modrusan Z., Seshagiri S., Firestein R., Zhang Z.
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer.
Nat. Commun. 5:3830-3830(2014)

PubMed=25960936; DOI=10.4161/21624011.2014.954893
Boegel S., Lower M., Bukur T., Sahin U., Castle J.C.
A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines.
OncoImmunology 3:E954893-E954893(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z., Liu H., Degenhardt J., Mayba O., Gnad F., Liu J., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

Cell line collections KCLB; 00638
Cell line databases/resources CGH-DB; 127-1
CGH-DB; 9015-4
DepMap; ACH-001664
Ontologies EFO; EFO_0006758
BTO; BTO:0003478
Biological sample resources BioSample; SAMN03473180
Chemistry resources ChEMBL-Cells; CHEMBL3307747
ChEMBL-Targets; CHEMBL614935
PharmacoDB; SNU638_1476_2019
Gene expression databases ArrayExpress; E-MTAB-2706
GEO; GSM1374896
Other Wikidata; Q54955236
Polymorphism and mutation databases Cosmic; 685583
Cosmic; 848143
Cosmic; 869511
Cosmic; 921601
Cosmic; 1067207
Cosmic; 1090457
Cosmic; 1294961
Cosmic; 1528878
Cosmic; 2036662
Cosmic; 2373753
Cosmic; 2484959
Cosmic; 2646587
IARC_TP53; 7421
Entry history
Entry creation04-Apr-2012
Last entry updated06-Sep-2019
Version number23