Cellosaurus SNU-638 (CVCL_0102)

Cell line name SNU-638
Synonyms SNU638
Accession CVCL_0102
Resource Identification Initiative To cite this cell line use: SNU-638 (RRID:CVCL_0102)
Comments Part of: Seoul National University (SNU) cell line collection.
Sequence variation: Heterozygous for TP53 p.Arg282Trp (PubMed=9033653).
Omics: Deep exome analysis.
Omics: Deep RNAseq analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Disease Gastric adenocarcinoma (NCIt: C4004)
Derived from metastatic site: Ascites.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children: CVCL_L047 (SNU-638-5FU); CVCL_L048 (SNU-638-CIS)
Sex of cell Male
Category Cancer cell line
STR profile Source(s): KCLB; PubMed=25877200

Markers:
AmelogeninX
CSF1PO10,12
D13S31710
D16S53911,13
D18S5114,16
D21S1130.2,31
D3S135815
D5S81810,14 (KCLB)
10,13,14,15 (PubMed=25877200)
D7S8209,10
D8S117911,13
FGA17,27
Penta D9
Penta E14,18
TH017
TPOX8,11
vWA14,19
Publications

PubMed=9033653; DOI=10.1002/(SICI)1097-0215(19970207)70:4<443::AID-IJC12>3.0.CO;2-G
Park J.-G., Yang H.-K., Kim W.-H., Chung J.-K., Kang M.-S., Lee J.-H., Oh J.-H., Park H.-S., Yeo K.-S., Kang S.H., Song S.-Y., Kang Y.K., Bang Y.-J., Kim Y.I., Kim J.-P.
Establishment and characterization of human gastric carcinoma cell lines.
Int. J. Cancer 70:443-449(1997)

PubMed=10812166; DOI=10.1016/S0165-4608(99)00217-4
Chun Y.-H., Kil J.-I., Suh Y.-S., Kim S.-H., Kim H., Park S.-H.
Characterization of chromosomal aberrations in human gastric carcinoma cell lines using chromosome painting.
Cancer Genet. Cytogenet. 119:18-25(2000)

PubMed=15723654; DOI=10.1111/j.1349-7006.2005.00016.x
Takada H., Imoto I., Tsuda H., Sonoda I., Ichikura T., Mochizuki H., Okanoue T., Inazawa J.
Screening of DNA copy-number aberrations in gastric cancer cell lines by array-based comparative genomic hybridization.
Cancer Sci. 96:100-110(2005)

PubMed=19956504; DOI=10.4143/crt.2005.37.1.1
Ku J.-L., Park J.-G.
Biology of SNU cell lines.
Cancer Res. Treat. 37:1-19(2005)

PubMed=24807215; DOI=10.1038/ncomms4830
Liu J., McCleland M., Stawiski E.W., Gnad F., Mayba O., Haverty P.M., Durinck S., Chen Y.-J., Klijn C., Jhunjhunwala S., Lawrence M., Liu H., Wan Y., Chopra V., Yaylaoglu M.B., Yuan W., Ha C., Gilbert H.N., Reeder J., Pau G., Stinson J., Stern H.M., Manning G., Wu T.D., Neve R.M., de Sauvage F.J., Modrusan Z., Seshagiri S., Firestein R., Zhang Z.
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer.
Nat. Commun. 5:3830-3830(2014)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z., Liu H., Degenhardt J., Mayba O., Gnad F., Liu J., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

Cross-references
Cell line collections KCLB; 00638
Cell line databases/resources CGH-DB; 127-1
CGH-DB; 9015-4
Ontologies EFO; EFO_0006758
BTO; BTO:0003478
Biological sample resources BioSample; SAMN03473180
Chemistry resources ChEMBL-Cells; CHEMBL3307747
ChEMBL-Targets; CHEMBL614935
Gene expression databases GEO; GSM1374896
Polymorphism and mutation databases Cosmic; 685583
Cosmic; 848143
Cosmic; 869511
Cosmic; 921601
Cosmic; 1067207
Cosmic; 1090457
Cosmic; 1294961
Cosmic; 1528878
Cosmic; 2036662
Cosmic; 2484959