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Cellosaurus M059J (CVCL_0400)

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Cell line name M059J
Synonyms Mo 59J; MO59J
Accession CVCL_0400
Resource Identification Initiative To cite this cell line use: M059J (RRID:CVCL_0400)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
Part of: ENCODE project common cell types; tier 3.
Characteristics: Radiosensitive (PubMed=7494872).
Characteristics: Has a near pentaploid phenotype.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: Deep RNAseq analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Caution: Was incorrectly stated to have deleterious mutations in ATM in PubMed=12105990.
Sequence variations Heterozygous for PRKDC p.Thr1351Profs*8 (c.4051delA) (PubMed=11418067; CCLE).
Homozygous for PTEN p.Pro204fs*17 (c.610delC) (ATCC; CCLE; Cosmic-CLP).
Homozygous for TP53 p.Glu286lys (c.856G>A) (PubMed=11023613; CCLE; Cosmic-CLP).
Genome ancestry Source: PubMed=30894373

Origin% genome
African1.01
Native American0
East Asian, North2.75
East Asian, South0
South Asian0
European, North67.68
European, South28.55
Disease Glioblastoma (NCIt: C3058)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Originate from same individual CVCL_0401 ! M059K
Sex of cell Male
Age at sampling 33Y
Category Cancer cell line
STR profile Source(s): ATCC; Cosmic-CLP; PubMed=25877200

Markers:
AmelogeninX,Y (ATCC; Cosmic-CLP)
X (PubMed=25877200)
CSF1PO10,12 (ATCC; Cosmic-CLP)
10 (PubMed=25877200)
D3S135814
D5S81811,12 (ATCC; Cosmic-CLP)
12 (PubMed=25877200)
D7S82010,12 (ATCC; Cosmic-CLP)
10 (PubMed=25877200)
D8S117915
D13S31714
D16S53910,12
D18S5115,19
D21S1130,31.2
FGA20
Penta D12,13
Penta E7
TH019.3
TPOX8
vWA17

Run an STR similarity search on this cell line
Web pages http://genome.ucsc.edu/ENCODE/protocols/cell/human/M059J_Stam_protocol.pdf
Publications

PubMed=8316628; DOI=10.2307/3578196
Allalunis-Turner M.J., Barron G.M., Day R.S. III, Dobler K.D., Mirzayans R.
Isolation of two cell lines from a human malignant glioma specimen differing in sensitivity to radiation and chemotherapeutic drugs.
Radiat. Res. 134:349-354(1993)

PubMed=7494872; DOI=10.2307/3578948
Allalunis-Turner M.J., Zia P.K.Y., Barron G.M., Mirzayans R., Day R.S. III
Radiation-induced DNA damage and repair in cells of a radiosensitive human malignant glioma cell line.
Radiat. Res. 144:288-293(1995)

PubMed=10629611; DOI=10.1667/0033-7587(2000)153[0125:COTRMC]2.0.CO;2
Hoppe B.S., Jensen R.B., Kirchgessner C.U.
Complementation of the radiosensitive M059J cell line.
Radiat. Res. 153:125-130(2000)

PubMed=11023613; DOI=10.1667/0033-7587(2000)154[0473:HTFTMG]2.0.CO;2
Anderson C.W., Allalunis-Turner M.J.
Human TP53 from the malignant glioma-derived cell lines M059J and M059K has a cancer-associated mutation in exon 8.
Radiat. Res. 154:473-476(2000)

PubMed=11418067; DOI=10.1667/0033-7587(2001)156[0002:FMIPTG]2.0.CO;2
Anderson C.W., Dunn J.J., Freimuth P.I., Galloway A.M., Allalunis-Turner M.J.
Frameshift mutation in PRKDC, the gene for DNA-PKcs, in the DNA repair-defective, human, glioma-derived cell line M059J.
Radiat. Res. 156:2-9(2001)

PubMed=12105990; DOI=10.1667/0033-7587(2002)158[0195:DOAGMI]2.0.CO;2
Tsuchida R., Yamada T., Takagi M., Shimada A., Ishioka C., Katsuki Y., Igarashi T., Chessa L., Delia D., Teraoka H., Mizutani S.
Detection of ATM gene mutation in human glioma cell line M059J by a rapid frameshift/stop codon assay in yeast.
Radiat. Res. 158:195-201(2002)

PubMed=20164919; DOI=10.1038/nature08768
Bignell G.R., Greenman C.D., Davies H., Butler A.P., Edkins S., Andrews J.M., Buck G., Chen L., Beare D., Latimer C., Widaa S., Hinton J., Fahey C., Fu B., Swamy S., Dalgliesh G.L., Teh B.T., Deloukas P., Yang F., Campbell P.J., Futreal P.A., Stratton M.R.
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z., Liu H., Degenhardt J., Mayba O., Gnad F., Liu J., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747
Dutil J., Chen Z., Monteiro A.N., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

Cross-references
Cell line collections ATCC; CRL-2366
BCRC; 60382
BCRJ; 0151
Cell line databases/resources CCLE; M059J_CENTRAL_NERVOUS_SYSTEM
Cell_Model_Passport; SIDM00659
Cosmic-CLP; 949094
DepMap; ACH-001118
GDSC; 949094
LINCS_LDP; LCL-1356
Ontologies CLO; CLO_0007445
EFO; EFO_0005697
MCCL; MCC:0000294
Biological sample resources BioSample; SAMN03471832
BioSample; SAMN03473044
ENCODE; ENCBS062ILC
ENCODE; ENCBS235AAA
ENCODE; ENCBS304XWS
ENCODE; ENCBS370AFW
Chemistry resources ChEMBL-Cells; CHEMBL3308113
ChEMBL-Targets; CHEMBL1075494
PharmacoDB; M059J_877_2019
Gene expression databases ArrayExpress; E-MTAB-2706
ArrayExpress; E-MTAB-3610
GEO; GSM326251
GEO; GSM1374640
GEO; GSM1670070
Other Wikidata; Q54903415
Polymorphism and mutation databases Cosmic; 949094
Cosmic; 1746953
Cosmic; 2367537
IARC_TP53; 13244
Entry history
Entry creation04-Apr-2012
Last entry updated06-Sep-2019
Version number26