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Cellosaurus A-388 (CVCL_1063)

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Cell line name A-388
Synonyms A388
Accession CVCL_1063
Resource Identification Initiative To cite this cell line use: A-388 (RRID:CVCL_1063)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
Part of: Naval Biosciences Laboratory (NBL) collection (transferred to ATCC in 1982).
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Sequence variations Heterozygous for EGFR p.Arg832Cys (c.2494C>T) (ATCC).
Heterozygous for PIK3CA p.Glu545Lys (c.1633G>A) (ATCC).
Heterozygous for TP53 p.Cys135Phe (c.404G>T) (ATCC; Cosmic-CLP).
Genome ancestry Source: PubMed=30894373

Origin% genome
African4.06
Native American0.32
East Asian, North3.84
East Asian, South0
South Asian0
European, North50.76
European, South41.03
Disease Squamous cell carcinoma (NCIt: C2929)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling 86Y
Category Cancer cell line
STR profile Source(s): ATCC; Cosmic-CLP

Markers:
AmelogeninX
CSF1PO10,11
D5S81811,13
D7S82010
D13S31711
D16S53911,12
TH019,9.3
TPOX8,9
vWA17,18

Run an STR similarity search on this cell line
Publications

PubMed=4357758; DOI=10.1093/jnci/51.5.1417
Giard D.J., Aaronson S.A., Todaro G.J., Arnstein P., Kersey J.H., Dosik H., Parks W.P.
In vitro cultivation of human tumors: establishment of cell lines derived from a series of solid tumors.
J. Natl. Cancer Inst. 51:1417-1423(1973)

PubMed=327080; DOI=10.1093/jnci/59.1.221
Fogh J., Fogh J.M., Orfeo T.
One hundred and twenty-seven cultured human tumor cell lines producing tumors in nude mice.
J. Natl. Cancer Inst. 59:221-226(1977)

PubMed=833871; DOI=10.1093/jnci/58.2.209
Fogh J., Wright W.C., Loveless J.D.
Absence of HeLa cell contamination in 169 cell lines derived from human tumors.
J. Natl. Cancer Inst. 58:209-214(1977)

PubMed=22282976; DOI=10.1093/carcin/1.1.21
Day R.S. III, Ziolkowski C.H.J., Scudiero D.A., Meyer S.A., Mattern M.R.
Human tumor cell strains defective in the repair of alkylation damage.
Carcinogenesis 1:21-32(1980)

PubMed=3518877; DOI=10.3109/07357908609038260
Fogh J.
Human tumor lines for cancer research.
Cancer Invest. 4:157-184(1986)

PubMed=20164919; DOI=10.1038/nature08768
Bignell G.R., Greenman C.D., Davies H., Butler A.P., Edkins S., Andrews J.M., Buck G., Chen L., Beare D., Latimer C., Widaa S., Hinton J., Fahey C., Fu B., Swamy S., Dalgliesh G.L., Teh B.T., Deloukas P., Yang F., Campbell P.J., Futreal P.A., Stratton M.R.
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747
Dutil J., Chen Z., Monteiro A.N., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

Cross-references
Cell line collections ATCC; CRL-7905
Cell line databases/resources CCLE; A388_SKIN
Cell_Model_Passport; SIDM00794
Cosmic-CLP; 910697
DepMap; ACH-001442
LINCS_LDP; LCL-1342
Ontologies CLO; CLO_0001584
Biological sample resources BioSample; SAMN03471118
Chemistry resources ChEMBL-Cells; CHEMBL3308159
ChEMBL-Targets; CHEMBL2366355
GDSC; 910697
PharmacoDB; A388_43_2019
Gene expression databases ArrayExpress; E-MTAB-3610
GEO; GSM1669583
Other Wikidata; Q54606033
Polymorphism and mutation databases Cosmic; 688037
Cosmic; 910697
Cosmic; 1995333
IARC_TP53; 21164
Entry history
Entry creation04-Apr-2012
Last entry updated06-Sep-2019
Version number24