Cell line name | CAL-39 | ||||||||||||||||||
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Synonyms | CAL 39; CAL39; Centre Antoine Lacassagne-39 | ||||||||||||||||||
Accession | CVCL_1109 | ||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: CAL-39 (RRID:CVCL_1109) | ||||||||||||||||||
Comments | Part of: Cancer Cell Line Encyclopedia (CCLE) project. Part of: COSMIC cell lines project. Doubling time: 30 hours, at 34th passage (PubMed=21573363); ~50-70 hours (DSMZ). Microsatellite instability: Stable (MSS) (Sanger). Omics: Deep exome analysis. Omics: DNA methylation analysis. Omics: SNP array analysis. Omics: Transcriptome analysis. Derived from sampling site: Vulva. | ||||||||||||||||||
Sequence variations | Homozygous for FAT1 p.Arg2597Ter (c.7789C>T) (CCLE; Cosmic-CLP).Homozygous for TP53 p.Pro151His (c.452C>A) (ClinVar=VCV000376639) (CCLE; Cosmic-CLP). | ||||||||||||||||||
Genome ancestry | Source: PubMed=30894373
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Disease | Vulvar squamous cell carcinoma (NCIt: C4052) Vulvar squamous cell carcinoma (ORDO: Orphanet_494448) | ||||||||||||||||||
Species of origin | Homo sapiens (Human)
(NCBI Taxonomy: 9606)
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Sex of cell | Female | ||||||||||||||||||
Age at sampling | 76Y | ||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||
STR profile | Source(s): Cosmic-CLP; DSMZ Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||
Publications | PubMed=21573363; DOI=10.3892/ijo.3.2.293 PubMed=20164919; DOI=10.1038/nature08768 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747 | ||||||||||||||||||
Cross-references | |||||||||||||||||||
Cell line collections | DSMZ; ACC-187 | ||||||||||||||||||
Cell line databases/resources | CLDB; cl630
CCLE; CAL39_VULVA Cell_Model_Passport; SIDM00935 Cosmic-CLP; 924107 DepMap; ACH-002091 LINCS_LDP; LCL-1294 | ||||||||||||||||||
Ontologies | CLO; CLO_0002184 | ||||||||||||||||||
Biological sample resources | BioSample; SAMN03473368 | ||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3308716
ChEMBL-Targets; CHEMBL1075410 GDSC; 924107 PharmacoDB; CAL39_171_2019 | ||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-783
ArrayExpress; E-MTAB-3610 GEO; GSM1669651 | ||||||||||||||||||
Other | Wikidata; Q54808399 | ||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 924107
Cosmic; 1995358 IARC_TP53; 27146 | ||||||||||||||||||
Entry history | |||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||
Last entry update | 29-Oct-2020 | ||||||||||||||||||
Version number | 28 |