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Cellosaurus H-EMC-SS (CVCL_1238)

[Text version]

Cell line name H-EMC-SS
Synonyms HEMCSS
Accession CVCL_1238
Resource Identification Initiative To cite this cell line use: H-EMC-SS (RRID:CVCL_1238)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Genome ancestry Source: PubMed=30894373

Origin% genome
African0.61
Native American0.67
East Asian, North77.11
East Asian, South20.07
South Asian0.1
European, North0.01
European, South1.42
Disease Chondrosarcoma (NCIt: C2946)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 77Y
Category Cancer cell line
STR profile Source(s): Cosmic-CLP; RCB

Markers:
AmelogeninX
CSF1PO10,12
D5S81810,12
D7S8208,11
D13S3179,13 (Cosmic-CLP)
9 (RCB)
D16S5399,13
TH017,9
TPOX8
vWA14,17

Run an STR similarity search on this cell line
Publications

CLPUB00044
Ooshima F.
Establishment of a new cell line from human extraskeletal myxoid chondrosarcoma.
Dokkyo J. Med. Sci. 19:1-9(1992)

PubMed=20164919; DOI=10.1038/nature08768
Bignell G.R., Greenman C.D., Davies H., Butler A.P., Edkins S., Andrews J.M., Buck G., Chen L., Beare D., Latimer C., Widaa S., Hinton J., Fahey C., Fu B., Swamy S., Dalgliesh G.L., Teh B.T., Deloukas P., Yang F., Campbell P.J., Futreal P.A., Stratton M.R.
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747
Dutil J., Chen Z., Monteiro A.N., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

Cross-references
Cell line collections ECACC; 94042258
ICLC; HTL99016
RCB; RCB0508
Cell line databases/resources CLDB; cl1625
CLDB; cl4965
CCLE; HEMCSS_BONE
Cell_Model_Passport; SIDM00535
Cosmic-CLP; 907290
DepMap; ACH-001519
GDSC; 907290
LINCS_LDP; LCL-1458
Ontologies CLO; CLO_0003701
CLO; CLO_0051381
Biological sample resources BioSample; SAMN03472276
Chemistry resources ChEMBL-Cells; CHEMBL3308736
ChEMBL-Targets; CHEMBL1075451
Gene expression databases ArrayExpress; E-MTAB-3610
GEO; GSM827448
GEO; GSM1669877
Other Wikidata; Q54871889
Polymorphism and mutation databases Cosmic; 907290
Entry history
Entry creation04-Apr-2012
Last entry updated05-Jul-2019
Version number23