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Cellosaurus NCC-IT (CVCL_1451)

[Text version]

Cell line name NCC-IT
Synonyms NCCIT
Accession CVCL_1451
Resource Identification Initiative To cite this cell line use: NCC-IT (RRID:CVCL_1451)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Misspelling: NCC15; In PubMed=24812411 and Cosmic 2163758.
Sequence variations MAP2K4 p.Lys309Asn (c.927G>C) (PubMed=9331070).
Homozygous for TP53 p.Val272Cysfs*73 (c.814del) (CCLE; Cosmic-CLP).
Heterozygous for PTEN p.Arg173Pro (c.518G>C) (CCLE; Cosmic-CLP).
Genome ancestry Source: PubMed=30894373

Origin% genome
African0
Native American0
East Asian, North81.79
East Asian, South18.2
South Asian0
European, North0
European, South0
Disease Testicular embryonal carcinoma (NCIt: C6341)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_3045 (NCC-IT-A3)CVCL_XI44 (NCCIT_CDDP)
Sex of cell Male
Age at sampling 24Y
Category Cancer cell line
STR profile Source(s): ATCC; Cosmic-CLP

Markers:
AmelogeninX
CSF1PO10,12
D5S81810,13
D7S82010
D13S31711
D16S5399,12
TH017,9
TPOX8
vWA14,18

Run an STR similarity search on this cell line
Web pages https://de.wikipedia.org/wiki/NCC-IT_(Zelllinie)
Publications

PubMed=2842544
Teshima S., Shimosato Y., Hirohashi S., Tome Y., Hayashi I., Kanazawa H., Kakizoe T.
Four new human germ cell tumor cell lines.
Lab. Invest. 59:328-336(1988)

PubMed=9331070
Teng D.H.-F., Perry W.L. III, Hogan J.K., Baumgard M., Bell R., Berry S., Davis T., Frank D., Frye C., Hattier T., Hu R., Jammulapati S., Janecki T., Leavitt A., Mitchell J.T., Pero R., Sexton D., Schroeder M., Su P.-H., Swedlund B., Kyriakis J.M., Avruch J., Bartel P., Wong A.K.C., Oliphant A., Thomas A., Skolnick M.H., Tavtigian S.V.
Human mitogen-activated protein kinase kinase 4 as a candidate tumor suppressor.
Cancer Res. 57:4177-4182(1997)

PubMed=20164919; DOI=10.1038/nature08768
Bignell G.R., Greenman C.D., Davies H., Butler A.P., Edkins S., Andrews J.M., Buck G., Chen L., Beare D., Latimer C., Widaa S., Hinton J., Fahey C., Fu B., Swamy S., Dalgliesh G.L., Teh B.T., Deloukas P., Yang F., Campbell P.J., Futreal P.A., Stratton M.R.
Signatures of mutation and selection in the cancer genome.
Nature 463:893-898(2010)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747
Dutil J., Chen Z., Monteiro A.N., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

PubMed=31500094; DOI=10.3390/cancers11091316
Bakardjieva-Mihaylova V., Skvarova Kramarzova K., Slamova M., Svaton M., Rejlova K., Zaliova M., Dobiasova A., Fiser K., Stuchly J., Grega M., Rosova B., Zachoval R., Klezl P., Eis V., Kindlova E., Buchler T., Trka J., Boublikova L.
Molecular basis of cisplatin resistance in testicular germ cell tumors.
Cancers (Basel) 11:1316.1-1316.18(2019)

Cross-references
Cell line collections ATCC; CRL-2073
BCRC; 60314
BCRJ; 0369
NCBI_Iran; C624
Cell line databases/resources CCLE; NCCIT_TESTIS
Cell_Model_Passport; SIDM00655
Cosmic-CLP; 908441
DepMap; ACH-001578
Ontologies BTO; BTO:0004180
CLO; CLO_0007955
Biological sample resources BioSample; SAMN03471433
Chemistry resources ChEMBL-Cells; CHEMBL3308379
ChEMBL-Targets; CHEMBL1075511
PharmacoDB; NCCIT_999_2019
Gene expression databases ArrayExpress; E-MTAB-783
GEO; GSM1670159
Other Wikidata; Q17578676
Polymorphism and mutation databases Cosmic; 687051
Cosmic; 908441
Cosmic; 1090412
Cosmic; 2077186
Cosmic; 2163758
IARC_TP53; 21532
Entry history
Entry creation04-Apr-2012
Last entry updated19-Dec-2019
Version number26