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Cellosaurus SK-N-AS (CVCL_1700)

Cell line name SK-N-AS
Synonyms SKN-AS; SKNAS
Accession CVCL_1700
Resource Identification Initiative To cite this cell line use: SK-N-AS (RRID:CVCL_1700)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
From: Memorial Sloan Kettering Cancer Center; New York; USA.
Microsatellite instability: Stable (MSS) (Sanger).
Omics: Deep exome analysis.
Omics: Deep RNAseq analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Disease Neuroblastoma (NCIt: C3270)
Derived from metastatic site: Bone marrow.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_RS87 (SK-N-ASrCARBO2000)CVCL_RS88 (SK-N-ASrCDDP1000)CVCL_RS24 (SK-N-ASrCDDP500)
CVCL_RS89 (SK-N-ASrDACARB16)CVCL_RS90 (SK-N-ASrDOCE10)CVCL_RS91 (SK-N-ASrDOX10)
CVCL_RS92 (SK-N-ASrETO100)CVCL_RS93 (SK-N-ASrETO200)CVCL_RS94 (SK-N-ASrGEMCI10)
CVCL_RS95 (SK-N-ASrIRINO500)CVCL_RS96 (SK-N-ASrMEL1000)CVCL_RR29 (SK-N-ASrOXALI4000)
CVCL_RS97 (SK-N-ASrOXALI4000(-))CVCL_RS98 (SK-N-ASrPCL20)CVCL_RS99 (SK-N-ASrTOPO20)
CVCL_RR31 (SK-N-ASrVCR20)CVCL_RT00 (SK-N-ASrVINB10)CVCL_RT01 (SK-N-ASrVINOR20)
Sex of cell Female
Age at sampling 6Y
Category Cancer cell line
STR profile Source(s): ATCC; Cosmic-CLP; ECACC; PubMed=25877200; PubMed=28192521

Markers:
AmelogeninX
CSF1PO10,12
D13S3179
D16S53914
D18S5114,15
D21S1132.2,33.2
D3S135814
D5S81811,12
D7S82011,13
D8S117913,14
FGA20,22
Penta D9
Penta E7,14
TH019.3
TPOX11,12
vWA16,17
Web pages http://www.cells-talk.com/index.php/page/copelibrary?key=SK-N-AS
http://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/s/cell-lines-detail-509.html
Publications

DOI=10.1159/00040702
Helson L., Verma M., Helson C.
Vitamin E and human neuroblastoma.
(In) Modulation and mediation of cancer by vitamins; Meyskens F.L., Prasad K.N. (eds.); pp.258-265; Karger; Basel (1983)

PubMed=2987426; DOI=10.1007/BF00165170
Helson L., Helson C.
Human neuroblastoma cells and 13-cis-retinoic acid.
J. Neurooncol. 3:39-41(1985)

DOI=10.1016/B978-0-12-333530-2.50006-X
Israel M.A., Thiele C.J.
Tumor cell lines of the peripheral nervous system.
(In) Atlas of human tumor cell lines; Hay R.J., Park J.-G., Gazdar A.F. (eds.); pp.43-78; Academic Press; New York (1994)

PubMed=7838528
Cheng N.C., Van Roy N., Chan A., Beitsma M., Westerveld A., Speleman F., Versteeg R.
Deletion mapping in neuroblastoma cell lines suggests two distinct tumor suppressor genes in the 1p35-36 region, only one of which is associated with N-myc amplification.
Oncogene 10:291-297(1995)

PubMed=9283597; DOI=10.1016/S0165-4608(96)00362-7
Van Roy N., Jauch A., Van Gele M., Laureys G., Versteeg R., De Paepe A., Cremer T., Speleman F.
Comparative genomic hybridization analysis of human neuroblastomas: detection of distal 1p deletions and further molecular genetic characterization of neuroblastoma cell lines.
Cancer Genet. Cytogenet. 97:135-142(1997)

DOI=10.1007/0-306-46872-7_2
Thiele C.J.
Neuroblastoma.
(In) Human cell culture. Vol. 1. Cancer Cell Lines part 1; Masters J.R.W., Palsson B.O. (eds.); pp.21-53; Kluwer Academic Publishers; New York (1999)

PubMed=11550280; DOI=10.1002/gcc.1174
Van Roy N., Van Limbergen H., Vandesompele J., Van Gele M., Poppe B., Salwen H.R., Laureys G., Manoel N., De Paepe A., Speleman F.
Combined M-FISH and CGH analysis allows comprehensive description of genetic alterations in neuroblastoma cell lines.
Genes Chromosomes Cancer 32:126-135(2001)

PubMed=12702577
Saito-Ohara F., Imoto I., Inoue J., Hosoi H., Nakagawara A., Sugimoto T., Inazawa J.
PPM1D is a potential target for 17q gain in neuroblastoma.
Cancer Res. 63:1876-1883(2003)

PubMed=16822308; DOI=10.1186/1471-2407-6-177
Dam V., Morgan B.T., Mazanek P., Hogarty M.D.
Mutations in PIK3CA are infrequent in neuroblastoma.
BMC Cancer 6:177-177(2006)

PubMed=18724359; DOI=10.1038/nature07261
Mosse Y.P., Laudenslager M., Longo L., Cole K.A., Wood A., Attiyeh E.F., Laquaglia M.J., Sennett R., Lynch J.E., Perri P., Laureys G., Speleman F., Kim C., Hou C., Hakonarson H., Torkamani A., Schork N.J., Brodeur G.M., Tonini G.P., Rappaport E., Devoto M., Maris J.M.
Identification of ALK as a major familial neuroblastoma predisposition gene.
Nature 455:930-935(2008)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=22213050; DOI=10.1002/ijc.27415
Gawecka J.E., Geerts D., Koster J., Caliva M.J., Sulzmaier F.J., Opoku-Ansah J., Wada R.K., Bachmann A.S., Ramos J.W.
PEA15 impairs cell migration and correlates with clinical features predicting good prognosis in neuroblastoma.
Int. J. Cancer 131:1556-1568(2012)

PubMed=22460905; DOI=10.1038/nature11003
Barretina J.G., Caponigro G., Stransky N., Venkatesan K., Margolin A.A., Kim S., Wilson C.J., Lehar J., Kryukov G.V., Sonkin D., Reddy A., Liu M., Murray L., Berger M.F., Monahan J.E., Morais P., Meltzer J., Korejwa A., Jane-Valbuena J., Mapa F.A., Thibault J., Bric-Furlong E., Raman P., Shipway A., Engels I.H., Cheng J., Yu G.K., Yu J., Aspesi P. Jr., de Silva M., Jagtap K., Jones M.D., Wang L., Hatton C., Palescandolo E., Gupta S., Mahan S., Sougnez C., Onofrio R.C., Liefeld T., MacConaill L., Winckler W., Reich M., Li N., Mesirov J.P., Gabriel S.B., Getz G., Ardlie K., Chan V., Myer V.E., Weber B.L., Porter J., Warmuth M., Finan P., Harris J.L., Meyerson M., Golub T.R., Morrissey M.P., Sellers W.R., Schlegel R., Garraway L.A.
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Nature 483:603-607(2012)

PubMed=23202128; DOI=10.1038/ng.2493
Sausen M., Leary R.J., Jones S., Wu J., Reynolds C.P., Liu X., Blackford A.L., Parmigiani G., Diaz L.A. Jr., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E., Hogarty M.D.
Integrated genomic analyses identify ARID1A and ARID1B alterations in the childhood cancer neuroblastoma.
Nat. Genet. 45:12-17(2013)

PubMed=24466371; DOI=10.1593/tlo.13544
Loschmann N., Michaelis M., Rothweiler F., Zehner R., Cinatl J., Voges Y., Sharifi M., Riecken K., Meyer J., von Deimling A., Fichtner I., Ghafourian T., Westermann F., Cinatl J. Jr.
Testing of SNS-032 in a panel of human neuroblastoma cell lines with acquired resistance to a broad range of drugs.
Transl. Oncol. 6:685-696(2013)

PubMed=25485619; DOI=10.1038/nbt.3080
Klijn C., Durinck S., Stawiski E.W., Haverty P.M., Jiang Z., Liu H., Degenhardt J., Mayba O., Gnad F., Liu J., Pau G., Reeder J., Cao Y., Mukhyala K., Selvaraj S.K., Yu M., Zynda G.J., Brauer M.J., Wu T.D., Gentleman R.C., Manning G., Yauch R.L., Bourgon R., Stokoe D., Modrusan Z., Neve R.M., de Sauvage F.J., Settleman J., Seshagiri S., Zhang Z.
A comprehensive transcriptional portrait of human cancer cell lines.
Nat. Biotechnol. 33:306-312(2015)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=28192521; DOI=10.1371/journal.pone.0172140
Saintas E., Abrahams L., Ahmad G.T., Ajakaiye A.M., Alhumaidi A.S.H.A.M., Ashmore-Harris C., Clark I., Dura U.K., Fixmer C.N., Ike-Morris C., Mato Prado M., Mccullough D., Mishra S., Scholer K.M., Timur H., Williamson M.D., Alatsatianos M., Bahsoun B., Blackburn E., Hogwood C.E., Lithgow P.E., Rowe M., Yiangou L., Rothweiler F., Cinatl J. Jr., Zehner R., Baines A.J., Garrett M.D., Gourlay C.W., Griffin D.K., Gullick W.J., Hargreaves E., Howard M.J., Lloyd D.R., Rossman J.S., Smales C.M., Tsaousis A.D., von der Haar T., Wass M.N., Michaelis M.
Acquired resistance to oxaliplatin is not directly associated with increased resistance to DNA damage in SK-N-ASrOXALI4000, a newly established oxaliplatin-resistant sub-line of the neuroblastoma cell line SK-N-AS.
PLoS ONE 12:E0172140-E0172140(2017)

PubMed=28350380; DOI=10.1038/sdata.2017.33
Harenza J.L., Diamond M.A., Adams R.N., Song M.M., Davidson H.L., Hart L.S., Dent M.H., Fortina P., Reynolds C.P., Maris J.M.
Transcriptomic profiling of 39 commonly-used neuroblastoma cell lines.
Sci. Data 4:170033-170033(2017)

Cross-references
Cell line collections ATCC; CRL-2137
ECACC; 94092302
ICLC; HTL95026
Cell line databases/resources CLDB; cl4330
CLDB; cl4331
CCLE; SKNAS_AUTONOMIC_GANGLIA
CGH-DB; 61-1
CGH-DB; 9098-4
Cosmic-CLP; 724828
GDSC; 724828
IGRhCellID; SKNAS
LINCS_LDP; LCL-1969
Lonza; 447
Lonza; 1617
Ontologies BTO; BTO:0002827
CLO; CLO_0009051
EFO; EFO_0002859
Biological sample resources BioSample; SAMN03473210
Chemistry resources ChEMBL-Cells; CHEMBL3308785
ChEMBL-Targets; CHEMBL1075578
Gene expression databases ArrayExpress; E-MTAB-2706
ArrayExpress; E-MTAB-2770
ArrayExpress; E-MTAB-3610
GEO; GSM563352
GEO; GSM692855
GEO; GSM887592
GEO; GSM888675
GEO; GSM1670449
GEO; GSM2371254
GEO; GSM2394379
Other Wikidata; Q54954411
Polymorphism and mutation databases Cosmic; 724828
Cosmic; 848935
Cosmic; 930074
Cosmic; 1019941
Cosmic; 1109104
Cosmic; 1162002
Cosmic; 1167418
Cosmic; 1518070
Cosmic; 1526646
Cosmic; 1543772
Cosmic; 2058112
Cosmic; 2239472
Cosmic; 2393642
Cosmic; 2485950