Cell line name | CAL-29 | ||||||||||||||||||
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Synonyms | CAL 29; CAL29; Centre Antoine Lacassagne-29 | ||||||||||||||||||
Accession | CVCL_1808 | ||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: CAL-29 (RRID:CVCL_1808) | ||||||||||||||||||
Comments | Part of: Cancer Cell Line Encyclopedia (CCLE) project. Part of: COSMIC cell lines project. Part of: TCGA-110-CL cell line panel. Doubling time: 30 hours, at 18th passage (PubMed=11720483); ~50-60 hours (DSMZ). Microsatellite instability: Stable (MSS) (Sanger). Omics: Deep exome analysis. Omics: Deep RNAseq analysis. Omics: DNA methylation analysis. Omics: SNP array analysis. Omics: Transcriptome analysis. Derived from sampling site: Urinary bladder. | ||||||||||||||||||
Sequence variations | Heterozygous for PIK3CA p.His1047Arg (c.3140A>G) (ClinVar=VCV000013652) (CCLE; Cosmic-CLP).TERT c.1-124C>T (c.228C>T) (C228T); Note=In promoter (PubMed=24035680).Homozygous for TP53 p.Arg282Trp (c.844C>T) (ClinVar=VCV000012364) (CCLE; Cosmic-CLP). | ||||||||||||||||||
Genome ancestry | Source: PubMed=30894373
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Disease | Bladder carcinoma (NCIt: C4912) | ||||||||||||||||||
Species of origin | Homo sapiens (Human)
(NCBI Taxonomy: 9606)
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Sex of cell | Female | ||||||||||||||||||
Age at sampling | 80Y | ||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||
STR profile | Source(s): Cosmic-CLP; DSMZ Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||
Publications | PubMed=2440566 PubMed=11720483; DOI=10.1054/bjoc.2001.2105 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458 PubMed=22460905; DOI=10.1038/nature11003 PubMed=24367658; DOI=10.1371/journal.pone.0084411 PubMed=24035680; DOI=10.1016/j.eururo.2013.08.057 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017 PubMed=29732388; DOI=10.3233/BLC-180167 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747 PubMed=31068700; DOI=10.1038/s41586-019-1186-3 PubMed=31395879; DOI=10.1038/s41467-019-11415-2 | ||||||||||||||||||
Cross-references | |||||||||||||||||||
Cell line collections | DSMZ; ACC-515 | ||||||||||||||||||
Cell line databases/resources | CCLE; CAL29_URINARY_TRACT
Cell_Model_Passport; SIDM00936 Cosmic-CLP; 1290730 DepMap; ACH-000142 LINCS_LDP; LCL-1711 | ||||||||||||||||||
Biological sample resources | BioSample; SAMN03473515
BioSample; SAMN10988514 | ||||||||||||||||||
Chemistry resources | GDSC; 1290730
PharmacoDB; CAL29_169_2019 | ||||||||||||||||||
Gene expression databases | ArrayExpress; E-MTAB-2770
ArrayExpress; E-MTAB-3610 GEO; GSM827161 GEO; GSM886908 GEO; GSM887973 GEO; GSM1669649 | ||||||||||||||||||
Other | Wikidata; Q54808396 | ||||||||||||||||||
Polymorphism and mutation databases | Cosmic; 1285115
Cosmic; 1995357 Cosmic; 2050440 Cosmic; 2057444 Cosmic; 2444248 Cosmic; 2685941 IARC_TP53; 28275 LiGeA; CCLE_765 Progenetix; CVCL_1808 | ||||||||||||||||||
Entry history | |||||||||||||||||||
Entry creation | 04-Apr-2012 | ||||||||||||||||||
Last entry update | 12-Jan-2021 | ||||||||||||||||||
Version number | 29 |