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Cellosaurus VL51 (CVCL_3169)

[Text version]

Cell line name VL51
Synonyms SLVL; VL-51
Accession CVCL_3169
Resource Identification Initiative To cite this cell line use: VL51 (RRID:CVCL_3169)
Comments Part of: Cancer Cell Line Encyclopedia (CCLE) project.
Part of: COSMIC cell lines project.
Population: Japanese.
Doubling time: 70-80 hours (PubMed=8551798); ~28 hours (lot 11252016) (JCRB).
Microsatellite instability: Stable (MSS) (Sanger).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Deep exome analysis.
Omics: DNA methylation analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Derived from sampling site: Peripheral blood.
Genome ancestry Source: PubMed=30894373

Origin% genome
African0.61
Native American0.13
East Asian, North76.13
East Asian, South22.43
South Asian0.59
European, North0
European, South0.1
Disease Splenic marginal zone lymphoma (NCIt: C4663)
Splenic marginal zone lymphoma (ORDO: Orphanet_86854)
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 70Y
Category Cancer cell line
STR profile Source(s): Cosmic-CLP; JCRB; RCB

Markers:
AmelogeninX
CSF1PO11,12
D5S81811,12
D7S82010,11
D13S3178,10
D16S53912
TH018,9
TPOX8
vWA17,18

Run an STR similarity search on this cell line
Publications

PubMed=8551798; DOI=10.1016/0145-2126(95)00059-3
Inokuchi K., Abo J., Takahashi H., Miyake K., Inokuchi S., Dan K., Nomura T.
Establishment and characterization of a villous lymphoma cell line from splenic B-cell lymphoma.
Leuk. Res. 19:817-822(1995)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=27397505; DOI=10.1016/j.cell.2016.06.017
Iorio F., Knijnenburg T.A., Vis D.J., Bignell G.R., Menden M.P., Schubert M., Aben N., Goncalves E., Barthorpe S., Lightfoot H., Cokelaer T., Greninger P., van Dyk E., Chang H., de Silva H., Heyn H., Deng X., Egan R.K., Liu Q., Mironenko T., Mitropoulos X., Richardson L., Wang J., Zhang T., Moran S., Sayols S., Soleimani M., Tamborero D., Lopez-Bigas N., Ross-Macdonald P., Esteller M., Gray N.S., Haber D.A., Stratton M.R., Benes C.H., Wessels L.F.A., Saez-Rodriguez J., McDermott U., Garnett M.J.
A landscape of pharmacogenomic interactions in cancer.
Cell 166:740-754(2016)

PubMed=29892436; DOI=10.1098/rsos.172472
Shioda S., Kasai F., Watanabe K., Kawakami K., Ohtani A., Iemura M., Ozawa M., Arakawa A., Hirayama N., Kawaguchi E., Tano T., Miyata S., Satoh M., Shimizu N., Kohara A.
Screening for 15 pathogenic viruses in human cell lines registered at the JCRB Cell Bank: characterization of in vitro human cells by viral infection.
R. Soc. Open Sci. 5:172472-172472(2018)

PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747
Dutil J., Chen Z.-H., Monteiro A.N.A., Teer J.K., Eschrich S.A.
An interactive resource to probe genetic diversity and estimated ancestry in cancer cell lines.
Cancer Res. 79:1263-1273(2019)

Cross-references
Cell line collections JCRB; JCRB0159
JCRB; NIHS0247 - Discontinued
RCB; RCB1702
Cell line databases/resources CCLE; SLVL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE
Cell_Model_Passport; SIDM00374
Cosmic-CLP; 1331032
DepMap; ACH-002062
LINCS_LDP; LCL-1952
Ontologies CLO; CLO_0050869
Biological sample resources BioSample; SAMN03472064
Chemistry resources GDSC; 1331032
PharmacoDB; SLVL_1427_2019
Gene expression databases ArrayExpress; E-MTAB-3610
GEO; GSM827255
GEO; GSM866167
GEO; GSM1035345
GEO; GSM1035346
GEO; GSM1670458
Other Wikidata; Q54993196
Polymorphism and mutation databases Progenetix; CVCL_3169
Entry history
Entry creation04-Apr-2012
Last entry update29-Oct-2020
Version number27