Home  |  Contact

Cellosaurus BJ [Human fibroblast] (CVCL_3653)

[Text version]

Cell line name BJ [Human fibroblast]
Synonyms FF-WT-BJ; BJ1
Accession CVCL_3653
Resource Identification Initiative To cite this cell line use: BJ [Human fibroblast] (RRID:CVCL_3653)
Comments Part of: ENCODE project common cell types; tier 3.
Characteristics: Senesces at 72 PDL. Has a long lifespan in comparison with other normal human fibroblast cell lines (ATCC).
Omics: Deep RNAseq analysis.
Omics: DNA methylation analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K36me3 ChIP-seq epigenome analysis.
Omics: Transcriptome analysis.
Derived from sampling site: Foreskin; skin.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Children:
CVCL_C243 (246G1)CVCL_C244 (246G3)CVCL_C245 (246G4)
CVCL_C246 (246G5)CVCL_C247 (246G6)CVCL_DQ33 (346D1)
CVCL_DQ34 (346E1)CVCL_DQ35 (346E2)CVCL_DQ36 (346F1)
CVCL_DQ37 (363G1)CVCL_VG15 (4BJ1)CVCL_VG16 (5B1)
CVCL_VG17 (7B1)CVCL_VG18 (7B6)CVCL_C623 (B12-11)
CVCL_C620 (B12-2)CVCL_C621 (B12-3)CVCL_C622 (B12-6)
CVCL_C624 (B124-1)CVCL_C626 (B124-10)CVCL_C627 (B124-13)
CVCL_C625 (B124-2)CVCL_X732 (BJ epi iPS-C)CVCL_6D12 (BJ hiPSC #11)
CVCL_6D13 (BJ hiPSC #12)CVCL_6D14 (BJ hiPSC #5)CVCL_6D15 (BJ hiPSC #8)
CVCL_A4QM (BJ iPSC clone 1)CVCL_A4QN (BJ iPSC clone 2)CVCL_A4QP (BJ iPSC clone 3)
CVCL_X737 (BJ RiPS-A)CVCL_X738 (BJ RiPS-D)CVCL_X739 (BJ RiPS-E)
CVCL_X740 (BJ SiPS-C)CVCL_X741 (BJ SiPS-D)CVCL_C922 (BJ-RiPS-1.1)
CVCL_C923 (BJ-RiPS-1.2)CVCL_C924 (BJ-RiPS-1.3)CVCL_6573 (BJ1-hTERT)
CVCL_C921 (BJ1-iPS1)CVCL_V235 (BJ1-iPS3)CVCL_0G92 (BJC)
CVCL_0G93 (BJD)CVCL_VU02 (BJFF.6)CVCL_YR24 (CRTDi005-A)
CVCL_YR25 (CRTDi005-B)CVCL_ZI69 (CTRL-iPSC)CVCL_0G85 (eWT-BJ2)
CVCL_0G86 (eWT-BJ4)CVCL_QX15 (HNL1)CVCL_RL51 (HNL2)
CVCL_RL52 (HNL4)CVCL_RL53 (HNL5)CVCL_RL54 (HNL6)
CVCL_RL55 (HNLp)CVCL_C430 (IPS(Foreskin)-1)CVCL_C431 (IPS(Foreskin)-2)
CVCL_C432 (IPS(Foreskin)-3)CVCL_C433 (IPS(Foreskin)-4)CVCL_YT30 (ISFi001-A)
CVCL_ZZ36 (KKUi001-A)CVCL_ZJ15 (MPIi005-A)CVCL_YX99 (RCSIi001-A)
CVCL_VT49 (REGUi001-A)CVCL_VT50 (REGUi002-A)CVCL_RL56 (T10)
CVCL_RL57 (T11 [Human ESC])CVCL_YR26 (UNIPDi004-A)CVCL_YR27 (UNIPDi004-B)
Sex of cell Male
Age at sampling <1M
Category Finite cell line
STR profile Source(s): ATCC; PubMed=29444910

Markers:
AmelogeninX,Y
CSF1PO10,12
D5S81812
D7S82011,12
D13S3178,9
D16S5399,13
D21S1129
TH017,8
TPOX10,11
vWA16,18

Run an STR similarity search on this cell line
Web pages https://strap.nci.nih.gov/celline_detail.php?sample_id=67
http://genome.ucsc.edu/ENCODE/protocols/cell/human/BJ_Stam_protocol.pdf
Publications

PubMed=23325432; DOI=10.1101/gr.147942.112
Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E., Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A., Crawford G.E., Absher D.M., Wold B.J., Myers R.M.
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=29444910; DOI=10.1530/ERC-17-0445
Hofving T., Arvidsson Y., Almobarak B., Inge L., Pfragner R., Persson M., Stenman G., Kristiansson E., Johanson V., Nilsson O.
The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell lines.
Endocr. Relat. Cancer 25:367-380(2018)

Cross-references
Cell line collections AddexBio; P0012005/4972
ATCC; CRL-2522
Cell line databases/resources Lonza; 723
SKIP; SKIP001154
TOKU-E; 672
Ontologies BTO; BTO:0003807
CLO; CLO_0001980
EFO; EFO_0002779
Biological sample resources ENCODE; ENCBS070WLP
ENCODE; ENCBS074ENC
ENCODE; ENCBS137RRI
ENCODE; ENCBS170GUW
ENCODE; ENCBS198NMJ
ENCODE; ENCBS335XLL
ENCODE; ENCBS339MSO
ENCODE; ENCBS488ZLU
ENCODE; ENCBS610AAA
ENCODE; ENCBS611AAA
ENCODE; ENCBS612AAA
ENCODE; ENCBS613AAA
ENCODE; ENCBS614AAA
ENCODE; ENCBS615AAA
ENCODE; ENCBS616AAA
ENCODE; ENCBS628EGC
ENCODE; ENCBS683XYV
ENCODE; ENCBS693PNC
ENCODE; ENCBS753AAA
ENCODE; ENCBS754AAA
ENCODE; ENCBS772THG
ENCODE; ENCBS815JWZ
ENCODE; ENCBS911DVL
ENCODE; ENCBS935PZD
Chemistry resources ChEMBL-Cells; CHEMBL3307781
ChEMBL-Targets; CHEMBL614358
Gene expression databases GEO; GSM248213
GEO; GSM248214
GEO; GSM472898
GEO; GSM472924
GEO; GSM472925
GEO; GSM579886
GEO; GSM579887
GEO; GSM736518
GEO; GSM736596
GEO; GSM749677
GEO; GSM749752
GEO; GSM923444
GEO; GSM945178
GEO; GSM945204
GEO; GSM945207
GEO; GSM945235
GEO; GSM2988896
Other Wikidata; Q54796903
Entry history
Entry creation04-Apr-2012
Last entry update12-Jan-2021
Version number24