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Cellosaurus GM06990 (CVCL_9587)

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Cell line name GM06990
Synonyms GM06990A; CEPH-1331-NA06990; 1331-8233
Accession CVCL_9587
Secondary accession CVCL_G376
Resource Identification Initiative To cite this cell line use: GM06990 (RRID:CVCL_9587)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: ENCODE project common cell types; tier 3.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 133102.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: Deep RNAseq analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K36me3 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Sequence variations Heterozygous for CYP2C9 p.Arg144Cys (c.416C>T); allele CYP2C9*2 (Coriell).
HLA typing Source: IPD-IMGT/HLA; 25804
Class I
HLA-AA*02:01,24:02
HLA-BB*51:01,07:02:01
HLA-CC*15:03,07:02
Class II
HLA-DPDPA1*01:03,01:03
DPB1*02:01:02,04:02
HLA-DQDQA1*01:03,03:01
DQB1*03:02,06:03
HLA-DRDRB1*13:01,04:04
DRB3*10:01
DRB4*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 41Y
Category Transformed cell line
STR profile Source(s): PubMed=11416159

Markers:
AmelogeninX
D8S117914,15
D18S5116,17
D21S1131,32.2
FGA19,20
TH016,9.3
vWA14,16

Run an STR similarity search on this cell line
Web pages http://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda (1992)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480
Cheung V.G., Nayak R.R., Wang I.X., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:E1000480-E1000480(2010)

PubMed=23861383; DOI=10.1101/gr.155218.113
Mesner L.D., Valsakumar V., Cieslik M., Pickin R., Hamlin J.L., Bekiranov S.
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins.
Genome Res. 23:1774-1788(2013)

Cross-references
Cell line collections Coriell; GM06990
Cell line databases/resources dbMHC; 48538
IHW; IHW01003
IPD-IMGT/HLA; 25804
Ontologies CLO; CLO_0036556
EFO; EFO_0002783
Biological sample resources BioSample; SAMN00004982
ENCODE; ENCBS057ENC
ENCODE; ENCBS058ENC
ENCODE; ENCBS059ENC
ENCODE; ENCBS060ENC
ENCODE; ENCBS061ENC
ENCODE; ENCBS062ENC
ENCODE; ENCBS063ENC
ENCODE; ENCBS064ENC
ENCODE; ENCBS146QHV
ENCODE; ENCBS177AAA
ENCODE; ENCBS185XLT
ENCODE; ENCBS414HDG
ENCODE; ENCBS875KTK
ENCODE; ENCBS987SKT
Gene expression databases GEO; GSE38809
GEO; GSM207754
GEO; GSM420468
GEO; GSM472903
GEO; GSM472904
GEO; GSM660029
GEO; GSM660236
GEO; GSM660440
GEO; GSM736558
GEO; GSM736635
GEO; GSM749705
GEO; GSM749708
GEO; GSM827333
GEO; GSM905817
GEO; GSM905912
GEO; GSM906007
GEO; GSM923443
GEO; GSM931323
GEO; GSM931324
GEO; GSM945179
GEO; GSM945205
GEO; GSM945213
GEO; GSM945237
Other Wikidata; Q54842431
Entry history
Entry creation06-Jun-2012
Last entry updated24-May-2019
Version number21