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Cellosaurus GM06990 (CVCL_9587)

[Text version]
Cell line name GM06990
Synonyms GM06990A; CEPH-1331-NA06990; 1331-8233
Accession CVCL_9587
Secondary accession CVCL_G376
Resource Identification Initiative To cite this cell line use: GM06990 (RRID:CVCL_9587)
Comments Part of: CEPH/Utah pedigree cell line collection.
Part of: ENCODE project common cell types; tier 3.
Part of: International Histocompatibility Workshop cell lines.
Registration: CEPH Families Reference Panel; 133102.
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CTCF ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K36me3 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Cell type: B-cell; CL=CL_0000236.
Sequence variations
  • Mutation; HGNC; 2623; CYP2C9; Simple; p.Arg144Cys (c.430C>T) (416C>T); ClinVar=VCV000008409; Zygosity=Heterozygous; Note=CYP2C9*2 allele (Coriell=GM06990).
HLA typing Source: IPD-IMGT/HLA=25804
Class I
HLA-AA*02:01,24:02
HLA-BB*51:01,07:02:01
HLA-CC*15:03,07:02
Class II
HLA-DPDPA1*01:03,01:03
DPB1*02:01:02,04:02
HLA-DQDQA1*01:03,03:01
DQB1*03:02,06:03
HLA-DRDRB1*13:01,04:04
DRB3*10:01
DRB4*01
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling 41Y
Category Transformed cell line
STR profile Source(s): PubMed=11416159

Markers:
AmelogeninX
D8S117914,15
D18S5116,17
D21S1131,32.2
FGA19,20
TH016,9.3
vWA14,16

Run an STR similarity search on this cell line
Web pages https://www.cephb.fr/en/familles_CEPH.php
Publications

CLPUB00447
Mulivor R.A., Suchy S.F.
1992/1993 catalog of cell lines. NIGMS human genetic mutant cell repository. 16th edition. October 1992.
(In) Institute for Medical Research (Camden, N.J.) NIH 92-2011; pp.1-918; National Institutes of Health; Bethesda (1992)

PubMed=11416159; DOI=10.1073/pnas.121616198
Masters J.R.W., Thomson J.A., Daly-Burns B., Reid Y.A., Dirks W.G., Packer P., Toji L.H., Ohno T., Tanabe H., Arlett C.F., Kelland L.R., Harrison M., Virmani A.K., Ward T.H., Ayres K.L., Debenham P.G.
Short tandem repeat profiling provides an international reference standard for human cell lines.
Proc. Natl. Acad. Sci. U.S.A. 98:8012-8017(2001)

PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458
Rothenberg S.M., Mohapatra G., Rivera M.N., Winokur D., Greninger P., Nitta M., Sadow P.M., Sooriyakumar G., Brannigan B.W., Ulman M.J., Perera R.M., Wang R., Tam A., Ma X.-J., Erlander M., Sgroi D.C., Rocco J.W., Lingen M.W., Cohen E.E.W., Louis D.N., Settleman J., Haber D.A.
A genome-wide screen for microdeletions reveals disruption of polarity complex genes in diverse human cancers.
Cancer Res. 70:2158-2164(2010)

PubMed=20856902; DOI=10.1371/journal.pbio.1000480
Cheung V.G., Nayak R.R., Wang I.X.-R., Elwyn S., Cousins S.M., Morley M., Spielman R.S.
Polymorphic cis- and trans-regulation of human gene expression.
PLoS Biol. 8:e1000480.1-e1000480.14(2010)

PubMed=23861383; DOI=10.1101/gr.155218.113
Mesner L.D., Valsakumar V., Cieslik M., Pickin R., Hamlin J.L., Bekiranov S.
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins.
Genome Res. 23:1774-1788(2013)

Cross-references
Cell line collections (Providers) Coriell; GM06990
Cell line databases/resources CLO; CLO_0036556
dbMHC; 48538
IHW; IHW01003
IPD-IMGT/HLA; 25804
Biological sample resources BioSample; SAMN00004982
ENCODE; ENCBS057ENC
ENCODE; ENCBS058ENC
ENCODE; ENCBS059ENC
ENCODE; ENCBS060ENC
ENCODE; ENCBS061ENC
ENCODE; ENCBS062ENC
ENCODE; ENCBS063ENC
ENCODE; ENCBS064ENC
ENCODE; ENCBS146QHV
ENCODE; ENCBS177AAA
ENCODE; ENCBS185XLT
ENCODE; ENCBS414HDG
ENCODE; ENCBS875KTK
ENCODE; ENCBS987SKT
Encyclopedic resources Wikidata; Q54842431
Experimental variables resources EFO; EFO_0002783
Gene expression databases GEO; GSE38809
GEO; GSM207754
GEO; GSM420468
GEO; GSM472903
GEO; GSM472904
GEO; GSM660029
GEO; GSM660236
GEO; GSM660440
GEO; GSM736558
GEO; GSM736635
GEO; GSM749705
GEO; GSM749708
GEO; GSM749731
GEO; GSM827333
GEO; GSM905817
GEO; GSM905912
GEO; GSM906007
GEO; GSM923443
GEO; GSM931323
GEO; GSM931324
GEO; GSM945179
GEO; GSM945205
GEO; GSM945213
GEO; GSM945237
Entry history
Entry creation06-Jun-2012
Last entry update30-Jan-2024
Version number30