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Cellosaurus GM19238 (CVCL_9633)

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Cell line name GM19238
Accession CVCL_9633
Resource Identification Initiative To cite this cell line use: GM19238 (RRID:CVCL_9633)
Comments Part of: ENCODE project common cell types; tier 3.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: Yoruba in Ibadan, Nigeria (YRI).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Deep proteome analysis.
Omics: Deep RNAseq analysis.
Omics: Genome sequenced.
Omics: H3K4me1 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: H3K27ac ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM19238_Crawford_protocol.pdf
http://www.completegenomics.com/documents/PublicGenomes.pdf
Publications

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F., Zhang J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E., Hafler D., Daly M.J., Altshuler D.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20220758; DOI=10.1038/nature08872
Pickrell J.K., Marioni J.C., Pai A.A., Degner J.F., Engelhardt B.E., Nkadori E., Veyrieras J.-B., Stephens M., Gilad Y., Pritchard J.K.
Understanding mechanisms underlying human gene expression variation with RNA sequencing.
Nature 464:768-772(2010)

PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25
Morcos L., Ge B., Koka V., Lam K.C., Pokholok D.K., Gunderson K.L., Montpetit A., Verlaan D.J., Pastinen T.
Genome-wide assessment of imprinted expression in human cells.
Genome Biol. 12:R25.1-R25.14(2011)

PubMed=22797897; DOI=10.1073/pnas.1205199109
Iskow R.C., Gokcumen O., Abyzov A., Malukiewicz J., Zhu Q., Sukumar A.T., Pai A.A., Mills R.E., Habegger L., Cusanovich D.A., Rubel M.A., Perry G.H., Gerstein M., Stone A.C., Gilad Y., Lee C.
Regulatory element copy number differences shape primate expression profiles.
Proc. Natl. Acad. Sci. U.S.A. 109:12656-12661(2012)

PubMed=23676674; DOI=10.1038/nature12223
Wu L., Candille S.I., Choi Y., Xie D., Jiang L., Li-Pook-Than J., Tang H., Snyder M.
Variation and genetic control of protein abundance in humans.
Nature 499:79-82(2013)

PubMed=24136359; DOI=10.1126/science.1242429
McVicker G., van de Geijn B., Degner J.F., Cain C.E., Banovich N.E., Raj A., Lewellen N., Myrthil M., Gilad Y., Pritchard J.K.
Identification of genetic variants that affect histone modifications in human cells.
Science 342:747-749(2013)

PubMed=25468404; DOI=10.1186/s13059-014-0547-3
Zhou X., Cain C.E., Myrthil M., Lewellen N., Michelini K., Davenport E.R., Stephens M., Pritchard J.K., Gilad Y.
Epigenetic modifications are associated with inter-species gene expression variation in primates.
Genome Biol. 15:R547.1-R547.19(2014)

PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005
Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U., Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R., Scott S.A., Smith C.H., Toji L.H., Turner A., Kalman L.V.
Characterization of 137 genomic DNA reference materials for 28 pharmacogenetic genes: a GeT-RM collaborative project.
J. Mol. Diagn. 18:109-123(2016)

Cross-references
Cell line collections Coriell; GM19238
Ontologies CLO; CLO_0027146
EFO; EFO_0002788
Biological sample resources 4DN; 4DNSRE31VFYQ
ENCODE; ENCBS332FBI
ENCODE; ENCBS509ENC
ENCODE; ENCBS594JOC
IGSR; NA19238
Gene expression databases GEO; GSM112756
GEO; GSM188770
GEO; GSM273513
GEO; GSM291938
GEO; GSM315200
GEO; GSM485377
GEO; GSM485413
GEO; GSM489286
GEO; GSM489287
GEO; GSM489299
GEO; GSM489300
GEO; GSM651190
GEO; GSM651191
GEO; GSM816658
GEO; GSM1164211
GEO; GSM1164221
GEO; GSM1164231
GEO; GSM1164241
GEO; GSM1164251
GEO; GSM1204881
GEO; GSM1720165
Other Wikidata; Q54850323
Entry history
Entry creation06-Jun-2012
Last entry updated07-Sep-2018
Version number19