ID   GM19238
AC   CVCL_9633
DR   CLO; CLO_0027146
DR   EFO; EFO_0002788
DR   4DN; 4DNSRE31VFYQ
DR   Coriell; GM19238
DR   ENCODE; ENCBS332FBI
DR   ENCODE; ENCBS509ENC
DR   ENCODE; ENCBS594JOC
DR   GEO; GSM112756
DR   GEO; GSM188770
DR   GEO; GSM273513
DR   GEO; GSM291938
DR   GEO; GSM315200
DR   GEO; GSM485377
DR   GEO; GSM485413
DR   GEO; GSM489286
DR   GEO; GSM489287
DR   GEO; GSM489299
DR   GEO; GSM489300
DR   GEO; GSM651190
DR   GEO; GSM651191
DR   GEO; GSM816658
DR   GEO; GSM1164211
DR   GEO; GSM1164221
DR   GEO; GSM1164231
DR   GEO; GSM1164241
DR   GEO; GSM1164251
DR   GEO; GSM1204881
DR   GEO; GSM1720165
DR   IGSR; NA19238
DR   Wikidata; Q54850323
RX   PubMed=17122850;
RX   PubMed=19043577;
RX   PubMed=19797678;
RX   PubMed=20220758;
RX   PubMed=21418647;
RX   PubMed=22797897;
RX   PubMed=23676674;
RX   PubMed=24136359;
RX   PubMed=25468404;
RX   PubMed=26621101;
RX   PubMed=27792722;
WW   http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM19238_Crawford_protocol.pdf
WW   http://www.completegenomics.com/documents/PublicGenomes.pdf
CC   Part of: ENCODE project common cell types; tier 3.
CC   Part of: International Genome Sample Resource (1000 genomes project) cell lines.
CC   Population: African; Yoruba in Ibadan, Nigeria (YRI).
CC   HLA typing: A*30:01,36:01; B*53:01:01,57:03:01; C*04:01,18; DPA1*01:03:01,02:01:01; DPB1*01:01:01,02:01:02; DQA1*01:02:01,01:02:01; DQB1*05,06; DRB1*11:01:02,16 (PubMed=27792722).
CC   Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
CC   Omics: CNV analysis.
CC   Omics: Deep proteome analysis.
CC   Omics: Genome sequenced.
CC   Omics: H3K27ac ChIP-seq epigenome analysis.
CC   Omics: H3K27me3 ChIP-seq epigenome analysis.
CC   Omics: H3K4me1 ChIP-seq epigenome analysis.
CC   Omics: H3K4me3 ChIP-seq epigenome analysis.
CC   Omics: SNP array analysis.
CC   Omics: Transcriptome analysis by microarray.
CC   Omics: Transcriptome analysis by RNAseq.
CC   Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
OX   NCBI_TaxID=9606; ! Homo sapiens (Human)
SX   Female
AG   Age unspecified
CA   Transformed cell line
DT   Created: 06-06-12; Last updated: 30-01-24; Version: 25
//
RX   PubMed=17122850; DOI=10.1038/nature05329;
RA   Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D.,
RA   Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S.,
RA   Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D.,
RA   Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L.,
RA   Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J.,
RA   Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J.,
RA   Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P.,
RA   Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.;
RT   "Global variation in copy number in the human genome.";
RL   Nature 444:444-454(2006).
//
RX   PubMed=19043577; DOI=10.1371/journal.pgen.1000287;
RA   Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R.,
RA   De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C.,
RA   Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D.,
RA   Hafler D.A., Daly M.J., Altshuler D.M.;
RT   "Genetic analysis of human traits in vitro: drug response and gene
RT   expression in lymphoblastoid cell lines.";
RL   PLoS Genet. 4:E1000287-E1000287(2008).
//
RX   PubMed=19797678; DOI=10.1101/gr.097600.109;
RA   Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.;
RT   "Coexpression network based on natural variation in human gene
RT   expression reveals gene interactions and functions.";
RL   Genome Res. 19:1953-1962(2009).
//
RX   PubMed=20220758; DOI=10.1038/nature08872;
RA   Pickrell J.K., Marioni J.C., Pai A.A., Degner J.F., Engelhardt B.E.,
RA   Nkadori E., Veyrieras J.-B., Stephens M., Gilad Y., Pritchard J.K.;
RT   "Understanding mechanisms underlying human gene expression variation
RT   with RNA sequencing.";
RL   Nature 464:768-772(2010).
//
RX   PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25;
RA   Morcos L., Ge B., Koka V., Lam K.C.L., Pokholok D.K., Gunderson K.L.,
RA   Montpetit A., Verlaan D.J., Pastinen T.;
RT   "Genome-wide assessment of imprinted expression in human cells.";
RL   Genome Biol. 12:R25.1-R25.14(2011).
//
RX   PubMed=22797897; DOI=10.1073/pnas.1205199109;
RA   Iskow R.C., Gokcumen O., Abyzov A., Malukiewicz J., Zhu Q.-H.,
RA   Sukumar A.T., Pai A.A., Mills R.E., Habegger L., Cusanovich D.A.,
RA   Rubel M.A., Perry G.H., Gerstein M.B., Stone A.C., Gilad Y., Lee C.;
RT   "Regulatory element copy number differences shape primate expression
RT   profiles.";
RL   Proc. Natl. Acad. Sci. U.S.A. 109:12656-12661(2012).
//
RX   PubMed=23676674; DOI=10.1038/nature12223;
RA   Wu L.-F., Candille S.I., Choi Y., Xie D., Jiang L.-H., Li-Pook-Than J.,
RA   Tang H., Snyder M.P.;
RT   "Variation and genetic control of protein abundance in humans.";
RL   Nature 499:79-82(2013).
//
RX   PubMed=24136359; DOI=10.1126/science.1242429;
RA   McVicker G., van de Geijn B., Degner J.F., Cain C.E., Banovich N.E.,
RA   Raj A., Lewellen N., Myrthil M., Gilad Y., Pritchard J.K.;
RT   "Identification of genetic variants that affect histone modifications
RT   in human cells.";
RL   Science 342:747-749(2013).
//
RX   PubMed=25468404; DOI=10.1186/s13059-014-0547-3;
RA   Zhou X., Cain C.E., Myrthil M., Lewellen N., Michelini K.,
RA   Davenport E.R., Stephens M., Pritchard J.K., Gilad Y.;
RT   "Epigenetic modifications are associated with inter-species gene
RT   expression variation in primates.";
RL   Genome Biol. 15:547.1-547.19(2014).
//
RX   PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005;
RA   Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U.,
RA   Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R.,
RA   Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.;
RT   "Characterization of 137 genomic DNA reference materials for 28
RT   pharmacogenetic genes: a GeT-RM collaborative project.";
RL   J. Mol. Diagn. 18:109-123(2016).
//
RX   PubMed=27792722; DOI=10.1371/journal.pcbi.1005151;
RA   Dilthey A.T., Gourraud P.-A., Mentzer A.J., Cereb N., Iqbal Z.,
RA   McVean G.A.T.;
RT   "High-accuracy HLA type inference from whole-genome sequencing data
RT   using population reference graphs.";
RL   PLoS Comput. Biol. 12:e1005151.1-e1005151.16(2016).
//