ID   GM19239
AC   CVCL_9634
DR   CLO; CLO_0027144
DR   EFO; EFO_0002789
DR   4DN; 4DNSRKH549U5
DR   Coriell; GM19239
DR   ENCODE; ENCBS385ENC
DR   ENCODE; ENCBS513JGI
DR   ENCODE; ENCBS657HMS
DR   GEO; GSM112757
DR   GEO; GSM188771
DR   GEO; GSM273514
DR   GEO; GSM291939
DR   GEO; GSM315201
DR   GEO; GSM485378
DR   GEO; GSM485414
DR   GEO; GSM489288
DR   GEO; GSM489289
DR   GEO; GSM489301
DR   GEO; GSM489302
DR   GEO; GSM649315
DR   GEO; GSM651188
DR   GEO; GSM651189
DR   GEO; GSM816659
DR   GEO; GSM1164212
DR   GEO; GSM1164222
DR   GEO; GSM1164232
DR   GEO; GSM1164242
DR   GEO; GSM1164252
DR   GEO; GSM1720166
DR   IGSR; NA19239
DR   Wikidata; Q54850324
RX   PubMed=17122850;
RX   PubMed=19043577;
RX   PubMed=19797678;
RX   PubMed=20220758;
RX   PubMed=21397061;
RX   PubMed=21418647;
RX   PubMed=22797897;
RX   PubMed=23325432;
RX   PubMed=23676674;
RX   PubMed=24136359;
RX   PubMed=25468404;
RX   PubMed=26621101;
RX   PubMed=27792722;
RX   PubMed=29474986;
WW   http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM19239_Crawford_protocol.pdf
WW   http://www.completegenomics.com/documents/PublicGenomes.pdf
CC   Part of: ENCODE project common cell types; tier 3.
CC   Part of: International Genome Sample Resource (1000 genomes project) cell lines.
CC   Population: African; Yoruba in Ibadan, Nigeria (YRI).
CC   HLA typing: A*02:01,68:02:01; B*35:01,52:01:02; C*04:01,16; DPA1*02:01:01,02:02:02; DPB1*01:01:01; DQA1*01:03:01,05; DQB1*03:01,05; DRB1*12,13 (PubMed=27792722).
CC   Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
CC   Omics: CNV analysis.
CC   Omics: Deep proteome analysis.
CC   Omics: DNA methylation analysis.
CC   Omics: Genome sequenced.
CC   Omics: H3K27ac ChIP-seq epigenome analysis.
CC   Omics: H3K27me3 ChIP-seq epigenome analysis.
CC   Omics: H3K4me1 ChIP-seq epigenome analysis.
CC   Omics: H3K4me3 ChIP-seq epigenome analysis.
CC   Omics: SNP array analysis.
CC   Omics: Transcriptome analysis by microarray.
CC   Omics: Transcriptome analysis by RNAseq.
CC   Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
OX   NCBI_TaxID=9606; ! Homo sapiens (Human)
SX   Male
AG   Age unspecified
CA   Transformed cell line
DT   Created: 06-06-12; Last updated: 30-01-24; Version: 26
//
RX   PubMed=17122850; DOI=10.1038/nature05329;
RA   Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D.,
RA   Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S.,
RA   Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D.,
RA   Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L.,
RA   Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J.,
RA   Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J.,
RA   Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P.,
RA   Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.;
RT   "Global variation in copy number in the human genome.";
RL   Nature 444:444-454(2006).
//
RX   PubMed=19043577; DOI=10.1371/journal.pgen.1000287;
RA   Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R.,
RA   De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C.,
RA   Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D.,
RA   Hafler D.A., Daly M.J., Altshuler D.M.;
RT   "Genetic analysis of human traits in vitro: drug response and gene
RT   expression in lymphoblastoid cell lines.";
RL   PLoS Genet. 4:E1000287-E1000287(2008).
//
RX   PubMed=19797678; DOI=10.1101/gr.097600.109;
RA   Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.;
RT   "Coexpression network based on natural variation in human gene
RT   expression reveals gene interactions and functions.";
RL   Genome Res. 19:1953-1962(2009).
//
RX   PubMed=20220758; DOI=10.1038/nature08872;
RA   Pickrell J.K., Marioni J.C., Pai A.A., Degner J.F., Engelhardt B.E.,
RA   Nkadori E., Veyrieras J.-B., Stephens M., Gilad Y., Pritchard J.K.;
RT   "Understanding mechanisms underlying human gene expression variation
RT   with RNA sequencing.";
RL   Nature 464:768-772(2010).
//
RX   PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004;
RA   Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M.,
RA   Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.;
RT   "Population-genetic properties of differentiated human copy-number
RT   polymorphisms.";
RL   Am. J. Hum. Genet. 88:317-332(2011).
//
RX   PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25;
RA   Morcos L., Ge B., Koka V., Lam K.C.L., Pokholok D.K., Gunderson K.L.,
RA   Montpetit A., Verlaan D.J., Pastinen T.;
RT   "Genome-wide assessment of imprinted expression in human cells.";
RL   Genome Biol. 12:R25.1-R25.14(2011).
//
RX   PubMed=22797897; DOI=10.1073/pnas.1205199109;
RA   Iskow R.C., Gokcumen O., Abyzov A., Malukiewicz J., Zhu Q.-H.,
RA   Sukumar A.T., Pai A.A., Mills R.E., Habegger L., Cusanovich D.A.,
RA   Rubel M.A., Perry G.H., Gerstein M.B., Stone A.C., Gilad Y., Lee C.;
RT   "Regulatory element copy number differences shape primate expression
RT   profiles.";
RL   Proc. Natl. Acad. Sci. U.S.A. 109:12656-12661(2012).
//
RX   PubMed=23325432; DOI=10.1101/gr.147942.112;
RA   Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E.,
RA   Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A.,
RA   Crawford G.E., Absher D.M., Wold B.J., Myers R.M.;
RT   "Dynamic DNA methylation across diverse human cell lines and
RT   tissues.";
RL   Genome Res. 23:555-567(2013).
//
RX   PubMed=23676674; DOI=10.1038/nature12223;
RA   Wu L.-F., Candille S.I., Choi Y., Xie D., Jiang L.-H., Li-Pook-Than J.,
RA   Tang H., Snyder M.P.;
RT   "Variation and genetic control of protein abundance in humans.";
RL   Nature 499:79-82(2013).
//
RX   PubMed=24136359; DOI=10.1126/science.1242429;
RA   McVicker G., van de Geijn B., Degner J.F., Cain C.E., Banovich N.E.,
RA   Raj A., Lewellen N., Myrthil M., Gilad Y., Pritchard J.K.;
RT   "Identification of genetic variants that affect histone modifications
RT   in human cells.";
RL   Science 342:747-749(2013).
//
RX   PubMed=25468404; DOI=10.1186/s13059-014-0547-3;
RA   Zhou X., Cain C.E., Myrthil M., Lewellen N., Michelini K.,
RA   Davenport E.R., Stephens M., Pritchard J.K., Gilad Y.;
RT   "Epigenetic modifications are associated with inter-species gene
RT   expression variation in primates.";
RL   Genome Biol. 15:547.1-547.19(2014).
//
RX   PubMed=26621101; DOI=10.1016/j.jmoldx.2015.08.005;
RA   Pratt V.M., Everts R.E., Aggarwal P., Beyer B.N., Broeckel U.,
RA   Epstein-Baak R., Hujsak P., Kornreich R., Liao J., Lorier R.,
RA   Scott S.A., Smith C.-Y.H., Toji L.H., Turner A., Kalman L.V.;
RT   "Characterization of 137 genomic DNA reference materials for 28
RT   pharmacogenetic genes: a GeT-RM collaborative project.";
RL   J. Mol. Diagn. 18:109-123(2016).
//
RX   PubMed=27792722; DOI=10.1371/journal.pcbi.1005151;
RA   Dilthey A.T., Gourraud P.-A., Mentzer A.J., Cereb N., Iqbal Z.,
RA   McVean G.A.T.;
RT   "High-accuracy HLA type inference from whole-genome sequencing data
RT   using population reference graphs.";
RL   PLoS Comput. Biol. 12:e1005151.1-e1005151.16(2016).
//
RX   PubMed=29474986; DOI=10.1016/j.jmoldx.2018.01.011;
RA   Pratt V.M., Del Tredici A.L., Hachad H., Ji Y., Kalman L.V.,
RA   Scott S.A., Weck K.E.;
RT   "Recommendations for clinical CYP2C19 genotyping allele selection: a
RT   report of the Association for Molecular Pathology.";
RL   J. Mol. Diagn. 20:269-276(2018).
//