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Cellosaurus GM19240 (CVCL_9635)

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Cell line name GM19240
Accession CVCL_9635
Resource Identification Initiative To cite this cell line use: GM19240 (RRID:CVCL_9635)
Comments Part of: ENCODE project common cell types; tier 3.
Part of: Genetic Testing Reference Material (GeT-RM) samples.
Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: Yoruba in Ibadan, Nigeria (YRI).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Deep exome analysis.
Omics: Deep proteome analysis.
Omics: DNA methylation analysis.
Omics: Genome sequenced.
Omics: SNP array analysis.
Omics: Transcriptome analysis.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Female
Age at sampling Age unspecified
Category Transformed cell line
Web pages http://genome.ucsc.edu/ENCODE/protocols/cell/human/GM19240_Crawford_protocol.pdf
http://www.completegenomics.com/documents/PublicGenomes.pdf
https://www.ncbi.nlm.nih.gov/variation/tools/get-rm/
Publications

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F., Zhang J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E., Hafler D., Daly M.J., Altshuler D.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=21418647; DOI=10.1186/gb-2011-12-3-r25
Morcos L., Ge B., Koka V., Lam K.C., Pokholok D.K., Gunderson K.L., Montpetit A., Verlaan D.J., Pastinen T.
Genome-wide assessment of imprinted expression in human cells.
Genome Biol. 12:R25.1-R25.14(2011)

PubMed=23325432; DOI=10.1101/gr.147942.112
Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E., Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A., Crawford G.E., Absher D.M., Wold B.J., Myers R.M.
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

PubMed=23676674; DOI=10.1038/nature12223
Wu L., Candille S.I., Choi Y., Xie D., Jiang L., Li-Pook-Than J., Tang H., Snyder M.
Variation and genetic control of protein abundance in humans.
Nature 499:79-82(2013)

Cross-references
Cell line collections Coriell; GM19240
Ontologies CLO; CLO_0027143
EFO; EFO_0002790
Biological sample resources 4DN; 4DNSRWYYID1N
ENCODE; ENCBS338PQB
ENCODE; ENCBS510ENC
ENCODE; ENCBS760NLE
IGSR; NA19240
Gene expression databases GEO; GSM112758
GEO; GSM188772
GEO; GSM291940
GEO; GSM489284
GEO; GSM489285
GEO; GSM489297
GEO; GSM489298
GEO; GSM649269
GEO; GSM651108
GEO; GSM651109
GEO; GSM816648
GEO; GSM1720167
Other Wikidata; Q54850325
Entry history
Entry creation06-Jun-2012
Last entry updated07-Sep-2018
Version number18