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Cellosaurus SK-N-SH-RA (CVCL_D044)

[Text version]

Cell line name SK-N-SH-RA
Synonyms SK-N-SH_RA; SK-N-SH Retinoic acid
Accession CVCL_D044
Resource Identification Initiative To cite this cell line use: SK-N-SH-RA (RRID:CVCL_D044)
Comments Part of: ENCODE project common cell types; tier 3.
Population: Caucasian.
Omics: CTCF ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K36me3 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: DNA methylation analysis.
Sequence variations
  • Mutation; HGNC; 427; ALK; Simple; p.Phe1174Leu (c.3522C>A); ClinVar=VCV000217852; Zygosity=Heterozygous (from parent cell line).
  • Mutation; HGNC; 7989; NRAS; Simple; p.Gln61Lys (c.181C>A); ClinVar=VCV000073058; Zygosity=Heterozygous (from parent cell line).
Disease Neuroblastoma (NCIt: C3270)
Neuroblastoma (ORDO: Orphanet_635)
Derived from metastatic site: Bone marrow.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0531 (SK-N-SH)
Sex of cell Female
Age at sampling 4Y
Category Cancer cell line
Publications

PubMed=23325432; DOI=10.1101/gr.147942.112
Varley K.E., Gertz J., Bowling K.M., Parker S.L., Reddy T.E., Pauli-Behn F., Cross M.K., Williams B.A., Stamatoyannopoulos J.A., Crawford G.E., Absher D.M., Wold B.J., Myers R.M.
Dynamic DNA methylation across diverse human cell lines and tissues.
Genome Res. 23:555-567(2013)

Cross-references
Cell line databases/resources CLO; CLO_0037234
Biological sample resources ENCODE; ENCBS172JMM
ENCODE; ENCBS366ENC
ENCODE; ENCBS367ENC
ENCODE; ENCBS404ENC
ENCODE; ENCBS606NNZ
ENCODE; ENCBS718MJZ
ENCODE; ENCBS767VYD
ENCODE; ENCBS799ICU
Encyclopedic resources Wikidata; Q54954485
Experimental variables resources EFO; EFO_0002802
Gene expression databases GEO; GSM472912
GEO; GSM472913
GEO; GSM472917
GEO; GSM749667
GEO; GSM749693
GEO; GSM749700
GEO; GSM945202
GEO; GSM945209
GEO; GSM945210
GEO; GSM945317
Entry history
Entry creation22-Oct-2012
Last entry update23-Jun-2022
Version number19