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Cellosaurus GM18516 (CVCL_P463)

[Text version]
Cell line name GM18516
Accession CVCL_P463
Resource Identification Initiative To cite this cell line use: GM18516 (RRID:CVCL_P463)
Comments Part of: International Genome Sample Resource (1000 genomes project) cell lines.
Population: African; Yoruba in Ibadan, Nigeria (YRI).
Transformant: NCBI_TaxID; 10376; Epstein-Barr virus (EBV).
Omics: CNV analysis.
Omics: Deep proteome analysis.
Omics: Genome sequenced.
Omics: H3K27ac ChIP-seq epigenome analysis.
Omics: H3K27me3 ChIP-seq epigenome analysis.
Omics: H3K4me1 ChIP-seq epigenome analysis.
Omics: H3K4me3 ChIP-seq epigenome analysis.
Omics: Transcriptome analysis by microarray.
Omics: Transcriptome analysis by RNAseq.
Derived from site: In situ; Peripheral blood; UBERON=UBERON_0000178.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Sex of cell Male
Age at sampling Age unspecified
Category Transformed cell line
Publications

PubMed=17122850; DOI=10.1038/nature05329
Redon R., Ishikawa S., Fitch K.R., Feuk L., Perry G.H., Andrews T.D., Fiegler H., Shapero M.H., Carson A.R., Chen W.-W., Cho E.K., Dallaire S., Freeman J.L., Gonzalez J.R., Gratacos M., Huang J., Kalaitzopoulos D., Komura D., MacDonald J.R., Marshall C.R., Mei R., Montgomery L., Nishimura K., Okamura K., Shen F., Somerville M.J., Tchinda J., Valsesia A., Woodwark C., Yang F.-T., Zhang J.-J., Zerjal T., Zhang J., Armengol L., Conrad D.F., Estivill X., Tyler-Smith C., Carter N.P., Aburatani H., Lee C., Jones K.W., Scherer S.W., Hurles M.E.
Global variation in copy number in the human genome.
Nature 444:444-454(2006)

PubMed=19043577; DOI=10.1371/journal.pgen.1000287
Choy E., Yelensky R., Bonakdar S., Plenge R.M., Saxena R., De Jager P.L., Shaw S.Y., Wolfish C.S., Slavik J.M., Cotsapas C., Rivas M.A., Dermitzakis E.T., Cahir-McFarland E., Kieff E.D., Hafler D.A., Daly M.J., Altshuler D.M.
Genetic analysis of human traits in vitro: drug response and gene expression in lymphoblastoid cell lines.
PLoS Genet. 4:E1000287-E1000287(2008)

PubMed=19797678; DOI=10.1101/gr.097600.109
Nayak R.R., Kearns M., Spielman R.S., Cheung V.G.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Genome Res. 19:1953-1962(2009)

PubMed=20220758; DOI=10.1038/nature08872
Pickrell J.K., Marioni J.C., Pai A.A., Degner J.F., Engelhardt B.E., Nkadori E., Veyrieras J.-B., Stephens M., Gilad Y., Pritchard J.K.
Understanding mechanisms underlying human gene expression variation with RNA sequencing.
Nature 464:768-772(2010)

PubMed=21397061; DOI=10.1016/j.ajhg.2011.02.004
Campbell C.D., Sampas N., Tsalenko A., Sudmant P.H., Kidd J.M., Malig M., Vu T.H., Vives L., Tsang P., Bruhn L., Eichler E.E.
Population-genetic properties of differentiated human copy-number polymorphisms.
Am. J. Hum. Genet. 88:317-332(2011)

PubMed=24136357; DOI=10.1126/science.1242379
Khan Z., Ford M.J., Cusanovich D.A., Mitrano A., Pritchard J.K., Gilad Y.
Primate transcript and protein expression levels evolve under compensatory selection pressures.
Science 342:1100-1104(2013)

PubMed=24136359; DOI=10.1126/science.1242429
McVicker G., van de Geijn B., Degner J.F., Cain C.E., Banovich N.E., Raj A., Lewellen N., Myrthil M., Gilad Y., Pritchard J.K.
Identification of genetic variants that affect histone modifications in human cells.
Science 342:747-749(2013)

Cross-references
Cell line collections (Providers) Coriell; GM18516
Cell line databases/resources CLO; CLO_0024892
Biological sample resources IGSR; NA18516
Encyclopedic resources Wikidata; Q54849592
Gene expression databases GEO; GSM112581
GEO; GSM112885
GEO; GSM188861
GEO; GSM273461
GEO; GSM291718
GEO; GSM315148
GEO; GSM485466
GEO; GSM485431
GEO; GSM485482
GEO; GSM485416
GEO; GSM649225
GEO; GSM649861
GEO; GSM1164206
GEO; GSM1164216
GEO; GSM1164226
GEO; GSM1164236
GEO; GSM1164246
GEO; GSM1204878
GEO; GSM1719851
Proteomic databases PRIDE; PXD000419
PRIDE; PXD001406
Entry history
Entry creation05-Nov-2013
Last entry update30-Jan-2024
Version number18