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Cellosaurus COLO 205 SimpleCell O-GalNAc (CVCL_S023)

[Text version]

Cell line name COLO 205 SimpleCell O-GalNAc
Synonyms Colo205 SimpleCell; Colo205 SC
Accession CVCL_S023
Resource Identification Initiative To cite this cell line use: COLO 205 SimpleCell O-GalNAc (RRID:CVCL_S023)
Comments Characteristics: Cell engineered to produce only truncated GalNAc or NeuAc-alpha-2-6-GalNAc O-glycans.
Knockout cell: Method=ZFN; HGNC; 24338; C1GALT1C1.
Sequence variations Mutation; HGNC; 583; APC; Simple; p.Thr1556Asnfs*3 (c.4666dupA) (c.4666_4667insA); ClinVar=VCV000428112; Zygosity=Homozygous (from parent cell line).
Mutation; HGNC; 1097; BRAF; Simple; p.Val600Glu (c.1799T>A); ClinVar=VCV000013961; Zygosity=Heterozygous (from parent cell line).
Mutation; HGNC; 2514; CTNNB1; Simple; p.Asn287Ser (c.860A>G); ClinVar=VCV000133954; Zygosity=Homozygous (from parent cell line).
Mutation; HGNC; 11998; TP53; Simple; p.Tyr103fs*37 (c.308_321delTGTGTAACAGTTCC); Zygosity=Homozygous (from parent cell line).
Disease Colon adenocarcinoma (NCIt: C4349)
Derived from metastatic site: Ascites.
Species of origin Homo sapiens (Human) (NCBI Taxonomy: 9606)
Hierarchy Parent: CVCL_0218 (COLO 205)
Sex of cell Male
Age at sampling 70Y
Category Cancer cell line

PubMed=21983924; DOI=10.1038/nmeth.1731
Steentoft C., Vakhrushev S.Y., Vester-Christensen M.B., Schjoldager K.T.-B.G., Kong Y., Bennett E.P., Mandel U., Wandall H.H., Levery S.B., Clausen H.
Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines.
Nat. Methods 8:977-982(2011)

PubMed=23399548; DOI=10.1074/mcp.O112.021972
Vakhrushev S.Y., Steentoft C., Vester-Christensen M.B., Bennett E.P., Clausen H., Levery S.B.
Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.
Mol. Cell. Proteomics 12:932-944(2013)

PubMed=23584533; DOI=10.1038/emboj.2013.79
Steentoft C., Vakhrushev S.Y., Joshi H.J., Kong Y., Vester-Christensen M.B., Schjoldager K.T.-B.G., Lavrsen K., Dabelsteen S., Pedersen N.B., Marcos-Silva L., Gupta R., Bennett E.P., Mandel U., Brunak S., Wandall H.H., Levery S.B., Clausen H.
Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.
EMBO J. 32:1478-1488(2013)

Other Wikidata; Q54814075
Entry history
Entry creation05-Nov-2013
Last entry update20-May-2021
Version number17