UniProtKB/Swiss-Prot P33897: Variant p.Ser606Pro

ATP-binding cassette sub-family D member 1
Gene: ABCD1
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Variant information Variant position:

606 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Serine (S) to Proline (P) at position 606 (S606P, p.Ser606Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and polar (S) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In ALD; uncertain significance; CALD, AMN and ALMD-types. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs201774661 [ dbSNP | Ensembl ]

Sequence information Variant position:

606 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

745 The length of the canonical sequence.
Location on the sequence:

HHILQREGGWEAMCDWKDVL S GGEKQRIGMARMFYHRPKYA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         HHILQREGGW-------EAMCDWKDVLSGGEKQRIGMARMFYHRPKYA

Mouse                         RHILQREGGW-------EAVCDWKDVLSGGEKQRIGMARMF

Rat                           RHILQREGGW-------EAVCDWKDVLSGGEKQRIGMARMF

Zebrafish                     RYILEREGGW-------DAVSDWKDVLSGGEKQRMGMARMF

Drosophila                    EHIAQRDSF--------DVVRDWKDILSGGEKQRMAIARLF

Slime mold                    DYLLDRERFIKKSAQVNDLTHNWLNQLSPGEQQLIAIIRLI

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 745	ATP-binding cassette sub-family D member 1
Domain	474 – 700	ABC transporter

Literature citations
Mutational and protein analysis of patients and heterozygous women with X-linked adrenoleukodystrophy.
Feigenbaum V.; Lombard-Platet G.; Guidoux S.; Sarde C.-O.; Mandel J.-L.; Aubourg P.;
Am. J. Hum. Genet. 58:1135-1144(1996)
Cited for: VARIANTS ALD LEU-98; ILE-105; TRP-108; ARG-116; SER-148; VAL-200; GLY-221; LEU-263; THR-294; SER-512; TRP-518; TRP-522; ARG-560; PRO-606 AND TRP-660; Molecular analysis of ABCD1 gene in Indian patients with X-linked adrenoleukodystrophy.
Shukla P.; Gupta N.; Gulati S.; Ghosh M.; Vasisht S.; Sharma R.; Gupta A.K.; Kalra V.; Kabra M.;
Clin. Chim. Acta 412:2289-2295(2011)
Cited for: VARIANTS ALD GLN-401; PRO-516; LEU-560; PRO-606 AND GLN-660; X-linked adrenoleukodystrophy: ABCD1 de novo mutations and mosaicism.
Wang Y.; Busin R.; Reeves C.; Bezman L.; Raymond G.; Toomer C.J.; Watkins P.A.; Snowden A.; Moser A.; Naidu S.; Bibat G.; Hewson S.; Tam K.; Clarke J.T.; Charnas L.; Stetten G.; Karczeski B.; Cutting G.; Steinberg S.;
Mol. Genet. Metab. 104:160-166(2011)
Cited for: VARIANTS ALD LEU-139 DEL; ARG-198; ARG-266; GLU-266; TRP-401; GLN-518; PHE-523; CYS-540; LEU-560; PRO-606; HIS-617; THR-626; PRO-632; ARG-633; LYS-640 AND ASP-677; Genomic profiling identifies novel mutations and SNPs in ABCD1 gene: a molecular, biochemical and clinical analysis of X-ALD cases in India.
Kumar N.; Taneja K.K.; Kalra V.; Behari M.; Aneja S.; Bansal S.K.;
PLoS ONE 6:e25094-e25094(2011)
Cited for: VARIANTS ALD ARG-266; LYS-302; GLN-401; TRP-591; PRO-606; LYS-609 AND GLN-660;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.