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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P13569: Variant p.Arg560Thr

Cystic fibrosis transmembrane conductance regulator
Gene: CFTR
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Variant information Variant position: help 560 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Threonine (T) at position 560 (R560T, p.Arg560Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CF; impairs maturation and trafficking to the cell membrane; decrease in channel activity. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 560 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1480 The length of the canonical sequence.
Location on the sequence: help VLGEGGITLSGGQRARISLA R AVYKDADLYLLDSPFGYLDV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Gorilla                       VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

                              VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Rhesus macaque                VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Chimpanzee                    VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Mouse                         VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Rat                           VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Pig                           VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Bovine                        VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Rabbit                        VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Sheep                         VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Horse                         VLGEGGIQLSGGQRARISLARAVYKDADLYLLDSPFGYLDV

Xenopus laevis                VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFSYLDL

Zebrafish                     PMAEGGLNLSGGQKARVALARAVYRDADLYLLDAPFTHLDI
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1480 Cystic fibrosis transmembrane conductance regulator
Topological domain 359 – 858 Cytoplasmic
Domain 423 – 646 ABC transporter 1
Modified residue 549 – 549 Phosphoserine
Helix 550 – 563



Literature citations
Identification of mutations in regions corresponding to the two putative nucleotide (ATP)-binding folds of the cystic fibrosis gene.
Kerem B.-S.; Zielenski J.; Markiewicz D.; Bozon D.; Gazit E.; Yahav J.; Kennedy D.; Riordan J.R.; Collins F.S.; Rommens J.M.; Tsui L.-C.;
Proc. Natl. Acad. Sci. U.S.A. 87:8447-8451(1990)
Cited for: VARIANTS CF GLU-455; ARG-549; ILE-549; ASP-551; THR-560; ASN-563 AND HIS-574; Revertant mutants G550E and 4RK rescue cystic fibrosis mutants in the first nucleotide-binding domain of CFTR by different mechanisms.
Roxo-Rosa M.; Xu Z.; Schmidt A.; Neto M.; Cai Z.; Soares C.M.; Sheppard D.N.; Amaral M.D.;
Proc. Natl. Acad. Sci. U.S.A. 103:17891-17896(2006)
Cited for: CHARACTERIZATION OF VARIANTS CF PHE-508 DEL; THR-560; GLU-561 AND ILE-562;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.