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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P00439: Variant p.Ile65Thr

Phenylalanine-4-hydroxylase
Gene: PAH
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Variant information Variant position: help 65 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Isoleucine (I) to Threonine (T) at position 65 (I65T, p.Ile65Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and hydrophobic (I) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In PAH deficiency; severe; haplotypes 1,5,9,21,B; abolishes phenylalanine binding. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 65 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 452 The length of the canonical sequence.
Location on the sequence: help VGALAKVLRLFEENDVNLTH I ESRPSRLKKDEYEFFTHLDK The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         VGALAKVLRLFEENDVNLTHIESRPSRLKKDEYEFFTH-LD--K

Mouse                         VGALAKVLRLFEENEINLTHIESRPSRLNKDEYEFFTY-LD

Rat                           VGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY-LD

Bovine                        VGALARVLRLFEENDINLTHIESRPSRLRKDEYEFFTN-LD

Caenorhabditis elegans        AGALAETLKLFQAHDVNLSHIESRPSKTHEGCYEVLVEFAE

Drosophila                    SGALANILAIFKKHDINLVHIESRSSLRVPG-YEFFVE-AD

Slime mold                    IGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLD-LE
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 452 Phenylalanine-4-hydroxylase
Domain 36 – 114 ACT
Beta strand 62 – 69



Literature citations
Phenylalanine hydroxylase deficiency in a population in Germany: mutational profile and nine novel mutations.
Guldberg P.; Mallmann R.; Henriksen K.F.; Guettler F.;
Hum. Mutat. 8:276-279(1996)
Cited for: VARIANTS PAH DEFICIENCY LEU-40; SER-46; SER-48; 63-THR-HIS-64 DELINS PRO-ASN; THR-65; SER-68; CYS-241; ALA-245; GLN-261; LYS-280; LEU-281; CYS-299; GLY-390; HIS-394; VAL-403; TRP-408 AND CYS-414; Identification of seven new mutations in the phenylalanine hydroxylase gene, associated with hyperphenylalaninemia in the Belgian population.
Michiels L.; Francois B.; Raus J.; Vandevyver C.;
Hum. Mutat. Suppl. 1:S123-S124(1998)
Cited for: VARIANTS PAH DEFICIENCY PHE-39 DEL; THR-65; GLN-158; ILE-167; ALA-190; CYS-241 AND TRP-408; Phenylketonuria and hyperphenylalaninemia in eastern Germany: a characteristic molecular profile and 15 novel mutations.
Hennermann J.B.; Vetter B.; Wolf C.; Windt E.; Buehrdel P.; Seidel J.; Moench E.; Kulozik A.E.;
Hum. Mutat. 15:254-260(2000)
Cited for: VARIANTS PAH DEFICIENCY LEU-20; LEU-39; PRO-41; SER-48; LEU-55; THR-65; SER-68; TYR-84; ASP-104; CYS-110; PRO-155; GLN-158; GLN-183; ALA-190; THR-211; ILE-230; PHE-231; GLN-243; ALA-245; TRP-252; GLN-261; LEU-281; CYS-299; SER-300; VAL-306; VAL-309; CYS-325; ASP-330; ARG-344; VAL-344; VAL-348; PRO-349; CYS-386; GLY-390; PRO-395; VAL-403; TRP-408; SER-410 AND CYS-414; Tetrahydrobiopterin as an alternative treatment for mild phenylketonuria.
Muntau A.C.; Roschinger W.; Habich M.; Demmelmair H.; Hoffmann B.; Sommerhoff C.P.; Roscher A.A.;
N. Engl. J. Med. 347:2122-2132(2002)
Cited for: VARIANTS PAH DEFICIENCY LEU-39; SER-48; LEU-55; ASP-61; SER-65; THR-65; VAL-65; GLN-158; GLN-170; MET-177; ALA-245; GLN-261; LEU-275; LEU-281; SER-300; TYR-310; SER-314; GLY-390; VAL-403; TRP-408; PRO-413; CYS-414; ASN-415 AND HIS-417;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.