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UniProtKB/Swiss-Prot P51795: Variant p.Gly506Glu

H(+)/Cl(-) exchange transporter 5
Gene: CLCN5
Variant information

Variant position:  506
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Glycine (G) to Glutamate (E) at position 506 (G506E, p.Gly506Glu).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to medium size and acidic (E)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Nephrolithiasis 1 (NPHL1) [MIM:310468]: An X-linked recessive renal disease belonging to the 'Dent disease complex', a group of disorders characterized by proximal renal tubular defect, hypercalciuria, nephrocalcinosis and renal insufficiency. The spectrum of phenotypic features is remarkably similar in the various disorders, except for differences in the severity of bone deformities and renal impairment. Nephrolithiasis type 1 presents with hypercalciuria, nephrocalcinosis, renal stones and renal insufficiency. Patients lack urinary acidification defects, rickets, and osteomalacia. {ECO:0000269|PubMed:8559248}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In NPHL1.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  506
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  746
The length of the canonical sequence.

Location on the sequence:   FNSWCSQGADCITPGLYAMV  G AAACLGGVTRMTVSLVVIMF
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         FNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMF

Mouse                         FNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMF

Rat                           FNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMF

Pig                           FNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMF

Rabbit                        FNSWCSQGADCITPGLYAMVGAAACLGGVTRMTVSLVVIMF

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 746 H(+)/Cl(-) exchange transporter 5
Intramembrane 500 – 514 Helical


Literature citations

A common molecular basis for three inherited kidney stone diseases.
Lloyd S.E.; Pearce S.H.S.; Fisher S.E.; Steinmeyer K.; Schwappach B.; Schelnman S.J.; Harding B.; Bolino A.; Devoto M.; Goodyer P.; Rigden S.P.A.; Wrong O.; Jentsch T.J.; Craig I.W.; Thakker R.V.;
Nature 379:445-449(1996)
Cited for: VARIANT XLRHR LEU-244; VARIANT NPHL1 GLU-506; VARIANTS NPHL2 ARG-200 AND PRO-520;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.