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UniProtKB/Swiss-Prot Q03692: Variant p.Gly618Val

Collagen alpha-1(X) chain
Gene: COL10A1
Variant information

Variant position:  618
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Glycine (G) to Valine (V) at position 618 (G618V, p.Gly618Val).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to medium size and hydrophobic (V)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In SMCD.
Any additional useful information about the variant.

Sequence information

Variant position:  618
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  680
The length of the canonical sequence.

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.





Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

Chain 19 – 680 Collagen alpha-1(X) chain
Domain 547 – 680 C1q
Region 520 – 680 Nonhelical region (NC1)
Metal binding 626 – 626 Calcium 1
Metal binding 627 – 627 Calcium 1; via carbonyl oxygen
Metal binding 633 – 633 Calcium 1; via carbonyl oxygen
Metal binding 634 – 634 Calcium 1
Metal binding 634 – 634 Calcium 2; shared with neighboring subunits

Literature citations

Type X collagen multimer assembly in vitro is prevented by a Gly618 to Val mutation in the alpha 1(X) NC1 domain resulting in Schmid metaphyseal chondrodysplasia.
Chan D.; Cole W.G.; Rogers J.G.; Bateman J.F.;
J. Biol. Chem. 270:4558-4562(1995)
Cited for: VARIANT SMCD VAL-618;

Mutations of COL10A1 in Schmid metaphyseal chondrodysplasia.
Bateman J.F.; Wilson R.; Freddi S.; Lamande S.R.; Savarirayan R.;
Hum. Mutat. 25:525-534(2005)
Cited for: VARIANTS SMCD ARG-18; GLU-18; ASP-582; ARG-591; ARG-595; GLU-595; HIS-597; CYS-597; ASP-598; PRO-600; PRO-614; LYS-617; VAL-618; ARG-644; GLY-648; ARG-651; PRO-653 AND PRO-671; VARIANTS THR-27; HIS-198; ARG-545 AND MET-603;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.