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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q16394: Variant p.Arg280Ser

Exostosin-1
Gene: EXT1
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Variant information Variant position: help 280 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Serine (S) at position 280 (R280S, p.Arg280Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In EXT1. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 280 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 746 The length of the canonical sequence.
Location on the sequence: help RKYMLVFKGKRYLTGIGSDT R NALYHVHNGEDVVLLTTCKH The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         RKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKH

Mouse                         RKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVLLLTTCKH

Bovine                        RKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKH

Caenorhabditis elegans        RKYLVSFKGKRYVYGIGSGTRNLVHHLHNGDDIVMVTTCKH

Drosophila                    KKYLLAFKGKRYVHGIGSETRNSLFHLHNGRDMVLVTTCRH
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 746 Exostosin-1
Topological domain 29 – 746 Lumenal
Binding site 267 – 267
Binding site 269 – 269
Binding site 271 – 271
Binding site 280 – 280
Binding site 300 – 300
Mutagenesis 269 – 269 K -> A. Loss of N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity. No effect on glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity.
Mutagenesis 280 – 280 R -> A. Loss of N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity.
Turn 278 – 282



Literature citations
Evaluation of locus heterogeneity and EXT1 mutations in 34 families with hereditary multiple exostoses.
Raskind W.H.; Conrad E.U. III; Matsushita M.; Wijsman E.M.; Wells D.E.; Chapman N.; Sandell L.J.; Wagner M.J.; Houck J.;
Hum. Mutat. 11:231-239(1998)
Cited for: VARIANTS EXT1 GLY-280; SER-280; HIS-340 AND HIS-627 DEL;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.