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UniProtKB/Swiss-Prot P22888: Variant p.Ser616Tyr

Lutropin-choriogonadotropic hormone receptor
Gene: LHCGR
Variant information

Variant position:  616
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Serine (S) to Tyrosine (Y) at position 616 (S616Y, p.Ser616Tyr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to large size and aromatic (Y)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In LHR; Leydig cell hypoplasia type 1; micropenis.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  616
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  699
The length of the canonical sequence.

Location on the sequence:   VPLITVTNSKVLLVLFYPIN  S CANPFLYAIFTKTFQRDFFL
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         VPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTFQRDFFL

Mouse                         VPLITVTNSKVLLVLFYPVNSCANPFLYAVFTKAFQRDFFL

Rat                           VPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAFQRDFLL

Pig                           VPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAFRRDFFL

Bovine                        VPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAFQRDFFL

Chicken                       VPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAFQRDFFL

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 27 – 699 Lutropin-choriogonadotropic hormone receptor
Transmembrane 606 – 627 Helical; Name=7


Literature citations

Testicular and ovarian resistance to luteinizing hormone caused by inactivating mutations of the luteinizing hormone-receptor gene.
Latronico A.C.; Anasti J.; Arnhold I.J.P.; Rapaport R.; Mendonca B.B.; Bloise W.; Castro M.; Tsigos C.; Chrousos G.P.;
N. Engl. J. Med. 334:507-512(1996)
Cited for: VARIANT LHR TYR-616;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.