UniProtKB/SwissProt variant VAR

Variant information

Variant position:

267

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Tryptophan (W) at position 267 (R267W, p.Arg267Trp).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from large size and basic (R) to large size and aromatic (W)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-3

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In GSS deficiency.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs121909308 [ dbSNP | Ensembl ]

Sequence information

Variant position:

267

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

474

The length of the canonical sequence.

Location on the sequence:

SLDQDRRLFVDGQEIAVVYF R DGYMPRQYSLQNWEARLLLE

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         SLDQDRR--LFVDG----QEIAVVYFRDGYMPRQYSLQ---NWEARLLLE

Mouse                         SLDQNRR--LFMDD----QEVAVVYFRDGYMPSQYNSQ---

Rat                           SLDQNRR--LFMED----QEVAVVYFRDGYMPSQYNAQ---

Bovine                        SLDQDRR--LFMDG----QEIAVVYFRDGYMPGHYSLQ---

Xenopus laevis                TLDEERH--LFIDG----YEVAVAYFRTGYVPQDYTEQ---

Slime mold                    KLDEENGSVLIVDG----MEISVAYYRAGYTPNDYTSSGGD

Baker's yeast                 FIDDKTGK-LFIRD--TEQEIAVVYYRTGYTTTDYTSE--K

Fission yeast                 IHDKSSNK-LYMKTSFTTYEVAVVYYRVGYALDDYPSQ--E

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 474	Glutathione synthetase
Binding site	267 – 270
Beta strand	259 – 268

Literature citations

Mutations in the glutathione synthetase gene cause 5-oxoprolinuria.
Shi Z.-Z.; Habib G.M.; Rhead W.J.; Gahl W.A.; He X.; Sazer S.; Lieberman M.W.;
Nat. Genet. 14:361-365(1996)
Cited for: VARIANTS GSS DEFICIENCY GLY-219; TRP-267 AND CYS-283;

Missense mutations in the human glutathione synthetase gene result in severe metabolic acidosis, 5-oxoprolinuria, hemolytic anemia and neurological dysfunction.
Dahl N.; Pigg M.; Ristoff E.; Gali R.; Carlsson B.; Mannervik B.; Larsson A.; Board P.;
Hum. Mol. Genet. 6:1147-1152(1997)
Cited for: VARIANTS GSS DEFICIENCY ASP-26; PRO-188; GLY-219; ARG-254; TRP-267; CYS-270; HIS-270; CYS-283; GLN-286; CYS-330; VAL-464 AND GLU-469; CHARACTERIZATION OF VARIANTS GSS DEFICIENCY PRO-188; CYS-270; HIS-270 AND CYS-283; FUNCTION; CATALYTIC ACTIVITY; PATHWAY;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P48637: Variant p.Arg267Trp